Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT4G02725.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21914 | Canola | plastid | 95.16 | 73.29 |
| CDY22076 | Canola | plastid | 94.35 | 73.12 |
| AT4G02725.1 | Thale cress | plastid | 76.61 | 57.58 |
| Bra018531.1-P | Field mustard | cytosol, plastid, vacuole | 42.74 | 54.64 |
| KRH67228 | Soybean | plastid | 50.0 | 37.35 |
| Os03t0701300-00 | Rice | cytosol, vacuole | 28.23 | 35.35 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 47.58 | 34.91 |
| PGSC0003DMT400049761 | Potato | plastid | 41.13 | 32.9 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 44.35 | 30.73 |
| HORVU4Hr1G006090.1 | Barley | plastid | 37.9 | 27.49 |
| TraesCS4A01G275200.1 | Wheat | plastid | 37.9 | 26.4 |
| TraesCS4D01G035600.1 | Wheat | plastid | 37.9 | 26.4 |
| OQU91145 | Sorghum | plastid | 37.9 | 26.26 |
| Zm00001d033634_P001 | Maize | plastid | 38.71 | 26.09 |
| TraesCS4B01G038700.1 | Wheat | plastid | 37.1 | 25.99 |
| Solyc09g065300.2.1 | Tomato | plastid | 40.32 | 23.92 |
Protein Annotations
| EnsemblPlants:Bra036243.1 | EnsemblPlants:Bra036243.1-P | EnsemblPlantsGene:Bra036243 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36046 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002541F15 | UniProt:M4F587 | MapMan:35.2 |
Description
AT4G02725 (E=2e-042) | unknown protein
Coordinates
chrA09:-:87199..87647
Molecular Weight (calculated)
13756.4 Da
IEP (calculated)
7.418
GRAVY (calculated)
-0.024
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLSISTVP LSPSRLQTKT RISTLSTRTN LHSFNLNPTR TVSKVRGLRE ENDSRFVDEN GAVDDMEGYL GNLSLEYDSV WDTKPSWCQP WTIMVTGLSI
101: VACSWVILHS VLVSSLAVGL VGAW
101: VACSWVILHS VLVSSLAVGL VGAW
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.