Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G02725.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT4G02725.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049761 | Potato | plastid | 59.81 | 80.65 |
| Os03t0701300-00 | Rice | cytosol, vacuole | 34.45 | 72.73 |
| Bra018531.1-P | Field mustard | cytosol, plastid, vacuole | 29.67 | 63.92 |
| VIT_07s0151g00950.t01 | Wine grape | plastid | 47.37 | 58.58 |
| KRH67228 | Soybean | plastid | 44.02 | 55.42 |
| HORVU4Hr1G006090.1 | Barley | plastid | 41.63 | 50.88 |
| TraesCS4D01G035600.1 | Wheat | plastid | 42.11 | 49.44 |
| TraesCS4B01G038700.1 | Wheat | plastid | 41.63 | 49.15 |
| TraesCS4A01G275200.1 | Wheat | plastid | 41.63 | 48.88 |
| CDX91314 | Canola | plastid | 38.76 | 48.8 |
| CDY22076 | Canola | plastid | 37.32 | 48.75 |
| AT4G02725.1 | Thale cress | plastid | 38.28 | 48.48 |
| CDX97285 | Canola | plastid | 38.28 | 48.19 |
| CDY21914 | Canola | plastid | 36.84 | 47.83 |
| OQU91145 | Sorghum | plastid | 40.67 | 47.49 |
| GSMUA_Achr4P16580_001 | Banana | plastid | 38.76 | 45.25 |
| Zm00001d033634_P001 | Maize | plastid | 39.71 | 45.11 |
| Bra036243.1-P | Field mustard | plastid | 23.92 | 40.32 |
Protein Annotations
| EnsemblPlants:Solyc09g065300.2.1 | EnsemblPlantsGene:Solyc09g065300.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | SEG:seg | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000276C520 | UniProt:K4CUF7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr9:-:63354279..63360160
Molecular Weight (calculated)
23685.2 Da
IEP (calculated)
8.441
GRAVY (calculated)
-0.222
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MIATQSLSSS VLLPLLCLTP PVHRRVARSQ LSDIEFSSKL PSITSLSSHK FCKRTRTSTV RGINSNDPKE SAFFNENGVV EDMDSYLNYL SLEYDSVWDT
101: KPSWCQPWTI TLTGTVIISL SWLILHSAVA TAVVTTTIAA WWYIFLYSYP KAYSDMIAER RKSVISDKVG STSTELIVHT PQAYSDMIEE RRKRVTNGLE
201: DTYGDRKRQ
101: KPSWCQPWTI TLTGTVIISL SWLILHSAVA TAVVTTTIAA WWYIFLYSYP KAYSDMIAER RKSVISDKVG STSTELIVHT PQAYSDMIEE RRKRVTNGLE
201: DTYGDRKRQ
001: MASLSMSAVS LSPFRPQTEN LLSKLSFRTN LHSFNLKPIR ISTKVRSFGG NRREPKDSRF VDEKGVVDDM EGFLDNLSLE YDSVWDTKPS WCQPWTIMLT
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
101: GLSIVACSWV ILHSVIVSSL AVGVIGAWWY IFLYSYPKSY SEMIAERRKR VADGFEDIYG KNKPS
Arabidopsis Description
At4g02725 [Source:UniProtKB/TrEMBL;Acc:Q6DBF6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.