Factsheet for VIT_04s0023g02110.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 2
nucleus 2
mitochondrion 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02150.t01
VIT_04s0044g00320.t01
VIT_05s0020g00780.t01
VIT_05s0102g00080.t01
VIT_07s0031g00110.t01
VIT_07s0151g00950.t01
VIT_07s0205g00030.t01
VIT_08s0056g00160.t01
VIT_10s0116g00180.t01
VIT_13s0067g00280.t01
VIT_14s0066g00160.t01
VIT_14s0066g01000.t01
VIT_15s0021g00520.t01
VIT_15s0024g01440.t01
VIT_15s0048g00220.t01
VIT_19s0027g00200.t01
VIT_19s0090g00200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50910.1	VIT_05s0020g00780.t01	AT1G54770.1	21798944
AT3G50910.1	VIT_19s0027g00200.t01	AT1G79040.1	21798944
AT3G50910.1	VIT_10s0116g00180.t01	AT2G20060.1	21798944
AT3G50910.1	VIT_05s0102g00080.t01	AT2G43370.1	21798944
AT3G50910.1	VIT_14s0066g01000.t01	AT3G01550.1	21798944
AT3G50910.1	VIT_19s0090g00200.t01	AT3G20510.1	21798944
AT3G50910.1	VIT_04s0044g00320.t01	AT3G51510.1	21798944
AT3G50910.1	VIT_15s0021g00520.t01	AT3G60200.1	21798944
AT3G50910.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT3G50910.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT3G50910.1	VIT_07s0151g00950.t01	AT4G02725.1	21798944
AT3G50910.1	VIT_13s0067g00280.t01	AT5G05760.1	21798944
AT3G50910.1	VIT_15s0024g01440.t01	AT5G17630.1	21798944
AT3G50910.1	VIT_07s0205g00030.t01	AT5G65683.1	21798944
AT5G66480.1	VIT_14s0066g00160.t01	AT3G01660.1	21798944
AT5G66480.1	VIT_04s0023g02150.t01	AT3G50920.1	21798944
AT5G66480.1	VIT_13s0067g00280.t01	AT5G05760.1	21798944
AT5G66480.1	VIT_07s0031g00110.t01	AT5G67210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08190	Soybean	nucleus	45.98	52.52
CDX77962	Canola	nucleus, plastid	41.97	50.36
CDX73773	Canola	cytosol	41.57	50.24
KRH76747	Soybean	plastid	43.98	50.23
Zm00001d020667_P001	Maize	nucleus	13.25	49.62
Bra036850.1-P	Field mustard	plastid	40.56	48.67
KRH28715	Soybean	cytosol	39.96	48.54
Bra012880.1-P	Field mustard	nucleus	39.76	48.53
CDX90677	Canola	nucleus	39.56	48.28
CDY28989	Canola	nucleus	38.96	46.3
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	38.15	45.67
Solyc02g085000.2.1	Tomato	nucleus	42.37	45.67
GSMUA_Achr6P08980_001	Banana	nucleus	37.55	45.61
Bra037167.1-P	Field mustard	mitochondrion	19.28	45.5
AT3G50910.1	Thale cress	cytosol	40.76	45.41
PGSC0003DMT400009054	Potato	nucleus, plastid	41.57	43.04
AT5G66480.1	Thale cress	plastid	38.35	43.02
GSMUA_Achr1P12060_001	Banana	plastid	33.73	42.64
CDY18608	Canola	nucleus	30.12	41.32
CDY67893	Canola	nucleus	27.91	40.29
TraesCS6A01G272000.1	Wheat	nucleus	36.14	39.82
Os02t0704600-01	Rice	nucleus	36.14	39.47
HORVU6Hr1G068770.1	Barley	nucleus	35.94	39.43
TraesCS6D01G252200.1	Wheat	nucleus	35.54	39.42
TraesCS6B01G299600.1	Wheat	nucleus	35.54	38.65
OQU85551	Sorghum	cytosol, plastid	33.53	36.87
OQU78405	Sorghum	nucleus	30.92	36.15
Zm00001d038964_P001	Maize	nucleus	30.12	35.29
Zm00001d017768_P006	Maize	cytosol	32.73	34.32
Zm00001d051562_P001	Maize	plastid	29.92	33.79
KRH69884	Soybean	nucleus	42.97	29.56

Protein Annotations

EntrezGene:100259904	wikigene:100259904	MapMan:35.2	ProteinID:CBI17486	ProteinID:CBI17486.3	ncoils:Coil
UniProt:D7SPA7	EMBL:FN594959	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100259904	wikigene:LOC100259904	PANTHER:PTHR35490	TIGR:TC66018
TMHMM:TMhelix	UniParc:UPI0001BE0DC1	ArrayExpress:VIT_04s0023g02110	EnsemblPlantsGene:VIT_04s0023g02110	EnsemblPlants:VIT_04s0023g02110.t01	unigene:Vvi.17776
RefSeq:XP_002264304	RefSeq:XP_002264304.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:18598157..18604325

Molecular Weight (calculated)

54974.9 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.624

Length

498 amino acids

Sequence
(BLAST)

001: MKYSSEASER RSLPGLLPFL KAREQSADQI SLCFFSKSLI LPIRVFGTSP LFPGAMPTFT AIALDRLLEP GASKTVMKSA SDLKPVPDLK LERRNSTSTV
101: TTENKPLWSQ ISPALYATPE ATPLPDSPSS FPPSPYIINH KRRGPRLIKS FSQYDVPSGQ KIADGEGVKG NAKNIEPVVV ESANNGPVTF TVADPIVEEP
201: VNGFHNEKPE SSNSKNIFAT ENGPLKSDAV NSERDGDGDG DGDGDGDGDG DGDDFFDPQE SMSFTSNTEG EDFNGAEHSL KLTTPMGEFY DAWEELSSEG
301: AQQPSHREIE DEMREIRLSL LTEIEKRKQA EEALKNMRNV WQTISQQLSL VGLTLPADLA VVGEDGQPDV DIAQELSQQV SIARFVSDSI GRGIAKAQVE
401: MEMEAQIDSK NFEIARLWDR LHYYDAVNRE MSQRNQEGLE LARRERQLRK RRQRWVWGSI AAVITVGTAA LAWSYLPTGQ GSSGEDHFEA SEHDHETK

Best Arabidopsis Sequence Match ( AT3G50910.1 )
(BLAST)

001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE

Arabidopsis Description

AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.