Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 3
- vacuole 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51510.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67281 | Soybean | plastid | 81.32 | 41.81 |
| Bra038904.1-P | Field mustard | plastid | 75.82 | 40.35 |
| CDY16301 | Canola | plastid | 75.82 | 40.35 |
| CDY33273 | Canola | plastid | 75.82 | 40.35 |
| KRG94039 | Soybean | cytosol | 50.55 | 40.35 |
| Os05t0490900-01 | Rice | plastid | 74.73 | 39.53 |
| GSMUA_Achr10P... | Banana | plastid | 75.82 | 37.5 |
| Zm00001d038542_P001 | Maize | plastid | 69.23 | 37.28 |
| Bra036793.1-P | Field mustard | plastid | 74.73 | 36.56 |
| CDX78010 | Canola | plastid | 74.73 | 36.56 |
| CDX73716 | Canola | plastid | 73.63 | 36.02 |
| EES19726 | Sorghum | plastid | 71.43 | 35.91 |
| AT3G51510.1 | Thale cress | plastid | 71.43 | 35.91 |
| TraesCS1B01G319200.1 | Wheat | plastid | 65.93 | 35.29 |
| TraesCS1D01G307900.1 | Wheat | plastid | 65.93 | 35.29 |
| TraesCS1A01G308500.1 | Wheat | plastid | 65.93 | 35.09 |
| Solyc02g068270.2.1 | Tomato | extracellular, plastid | 78.02 | 33.02 |
| HORVU0Hr1G001170.1 | Barley | plastid | 63.74 | 29.74 |
| KRG95603 | Soybean | plastid | 57.14 | 28.11 |
| HORVU1Hr1G068500.3 | Barley | plastid | 51.65 | 27.81 |
Protein Annotations
| EntrezGene:100266100 | wikigene:100266100 | MapMan:35.2 | ProteinID:CBI37624 | ProteinID:CBI37624.3 | UniProt:D7U448 |
| EMBL:FN596506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100266100 |
| wikigene:LOC100266100 | PANTHER:PTHR36042 | TIGR:TC51779 | TMHMM:TMhelix | UniParc:UPI0001BE4EB6 | ArrayExpress:VIT_04s0044g00320 |
| EnsemblPlantsGene:VIT_04s0044g00320 | EnsemblPlants:VIT_04s0044g00320.t01 | unigene:Vvi.2285 | RefSeq:XP_002279284 | RefSeq:XP_002279284.1 | : |
Description
No Description!
Coordinates
chr4:-:21017366..21020791
Molecular Weight (calculated)
10184.0 Da
IEP (calculated)
4.439
GRAVY (calculated)
0.176
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MGNESEKSFE IPFYVYLLTS AVTAIAAIGS IFEYANKRPV FGVLSSDSIF YAPLLGFFVF TGIPTSAFLW FKSVQTANKE AEEQDKRDGY F
001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
Arabidopsis Description
AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.