Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 9
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51510.1 | Solyc07g066170.2.1 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0044g00320.t01 | Wine grape | vacuole | 33.02 | 78.02 |
| KRG94039 | Soybean | cytosol | 29.77 | 56.14 |
| Bra038904.1-P | Field mustard | plastid | 44.19 | 55.56 |
| CDY33273 | Canola | plastid | 44.19 | 55.56 |
| Os05t0490900-01 | Rice | plastid | 44.19 | 55.23 |
| CDY16301 | Canola | plastid | 43.72 | 54.97 |
| KRH67281 | Soybean | plastid | 45.12 | 54.8 |
| Zm00001d038542_P001 | Maize | plastid | 42.33 | 53.85 |
| TraesCS1B01G319200.1 | Wheat | plastid | 42.33 | 53.53 |
| TraesCS1A01G308500.1 | Wheat | plastid | 42.33 | 53.22 |
| TraesCS1D01G307900.1 | Wheat | plastid | 41.86 | 52.94 |
| GSMUA_Achr10P... | Banana | plastid | 44.65 | 52.17 |
| AT3G51510.1 | Thale cress | plastid | 41.86 | 49.72 |
| EES19726 | Sorghum | plastid | 41.86 | 49.72 |
| CDX73716 | Canola | plastid | 42.33 | 48.92 |
| Bra036793.1-P | Field mustard | plastid | 41.86 | 48.39 |
| CDX78010 | Canola | plastid | 41.86 | 48.39 |
| HORVU1Hr1G068500.3 | Barley | plastid | 36.28 | 46.15 |
| HORVU0Hr1G001170.1 | Barley | plastid | 41.4 | 45.64 |
| KRG95603 | Soybean | plastid | 36.28 | 42.16 |
Protein Annotations
| EnsemblPlants:Solyc02g068270.2.1 | EnsemblPlantsGene:Solyc02g068270.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36042 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002767922 | UniProt:K4B7F9 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2:-:38248723..38251735
Molecular Weight (calculated)
23490.7 Da
IEP (calculated)
6.541
GRAVY (calculated)
-0.164
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVALASSSLC NSPSSIIHSS KTSIPNFITF SSLSYYKKRG KSLASRSLGI VAATEGSVNK SSGKDEEKQE DPSVPTWAKP GTDEPPPWAR NEAQKDSSSI
101: QVPFVVYLLA SAVTAIAAIG SIFEYTNQKP VFGVLGSDSV FYAPLLGFFV FTGIPTSAFL WFKSVQVANK EAEEQDRRDG YILLPLSFST LWGGEVHPFL
201: QEKRKDREAT SYEVM
101: QVPFVVYLLA SAVTAIAAIG SIFEYTNQKP VFGVLGSDSV FYAPLLGFFV FTGIPTSAFL WFKSVQVANK EAEEQDRRDG YILLPLSFST LWGGEVHPFL
201: QEKRKDREAT SYEVM
001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
Arabidopsis Description
AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.