Factsheet for Zm00001d038542_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d020879_P001
Zm00001d025667_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51510.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT3G51510.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT3G51510.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT3G51510.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g00320.t01	Wine grape	vacuole	37.28	69.23
EES19726	Sorghum	plastid	71.01	66.3
Os05t0490900-01	Rice	plastid	60.95	59.88
TraesCS1D01G307900.1	Wheat	plastid	59.76	59.41
TraesCS1B01G319200.1	Wheat	plastid	59.76	59.41
TraesCS1A01G308500.1	Wheat	plastid	59.76	59.06
HORVU1Hr1G068500.3	Barley	plastid	50.3	50.3
HORVU0Hr1G001170.1	Barley	plastid	57.99	50.26
CDY33273	Canola	plastid	50.3	49.71
CDY16301	Canola	plastid	50.3	49.71
Bra038904.1-P	Field mustard	plastid	50.3	49.71
AT3G51510.1	Thale cress	plastid	52.66	49.17
KRG94039	Soybean	cytosol	33.14	49.12
KRH67281	Soybean	plastid	49.7	47.46
CDX78010	Canola	plastid	50.3	45.7
CDX73716	Canola	plastid	50.3	45.7
Bra036793.1-P	Field mustard	plastid	50.3	45.7
GSMUA_Achr10P...	Banana	plastid	48.52	44.57
Solyc02g068270.2.1	Tomato	extracellular, plastid	53.85	42.33
KRG95603	Soybean	plastid	41.42	37.84

Protein Annotations

EntrezGene:103630530	MapMan:35.2	UniProt:A0A1D6M745	ProteinID:AQK86887.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR36042	TMHMM:TMhelix	UniParc:UPI000221C3B7	EnsemblPlantsGene:Zm00001d038542
EnsemblPlants:Zm00001d038542_P001	EnsemblPlants:Zm00001d038542_T001	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:159649836..159650908

Molecular Weight (calculated)

18143.6 Da

IEP (calculated)

8.718

GRAVY (calculated)

-0.131

Length

169 amino acids

Sequence
(BLAST)

001: MAAAAVAIST SVCTSSRRST GCPNVRPQAR PLLGMPSLRR RLQTALAATG KTPGEAEEQV PAWAKPGADE PPPWEREGGA ARGQEARQVP FYAYLLASTI
101: TAIAAIGSIF EYTNQRPVFG IVGPDSALYA PLLGFFVFTG IPTSAFLWFK AVQTANREAE EQDRRDGFL

Best Arabidopsis Sequence Match ( AT3G51510.1 )
(BLAST)

001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L

Arabidopsis Description

AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.