Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G307900.1 | Wheat | plastid | 97.06 | 97.06 |
| TraesCS1A01G308500.1 | Wheat | plastid | 93.53 | 92.98 |
| HORVU1Hr1G068500.3 | Barley | plastid | 80.59 | 81.07 |
| HORVU0Hr1G001170.1 | Barley | plastid | 86.47 | 75.38 |
| VIT_04s0044g00320.t01 | Wine grape | vacuole | 35.29 | 65.93 |
| Os05t0490900-01 | Rice | plastid | 62.35 | 61.63 |
| Zm00001d038542_P001 | Maize | plastid | 59.41 | 59.76 |
| EES19726 | Sorghum | plastid | 58.24 | 54.7 |
| KRG94039 | Soybean | cytosol | 36.47 | 54.39 |
| CDY33273 | Canola | plastid | 51.18 | 50.88 |
| CDY16301 | Canola | plastid | 51.18 | 50.88 |
| Bra038904.1-P | Field mustard | plastid | 51.18 | 50.88 |
| KRH67281 | Soybean | plastid | 51.18 | 49.15 |
| AT3G51510.1 | Thale cress | plastid | 51.18 | 48.07 |
| CDX73716 | Canola | plastid | 50.0 | 45.7 |
| CDX78010 | Canola | plastid | 49.41 | 45.16 |
| Bra036793.1-P | Field mustard | plastid | 49.41 | 45.16 |
| GSMUA_Achr10P... | Banana | plastid | 48.82 | 45.11 |
| Solyc02g068270.2.1 | Tomato | extracellular, plastid | 53.53 | 42.33 |
| KRG95603 | Soybean | plastid | 42.35 | 38.92 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G319200.1 | EnsemblPlantsGene:TraesCS1B01G319200 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | PANTHER:PTHR36042 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:543479715..543480821
Molecular Weight (calculated)
17756.9 Da
IEP (calculated)
8.455
GRAVY (calculated)
-0.117
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAISLCG SRCVGPSRTP ESRLASQAAA APCARPSSSR RRLVVVAAKS SGKKADEKVP SWARPGSDEP PPWARDEGGA SGQEGDAVQV PFYAYLLASA
101: VTAIAAIGSI FEYTNGRAVF GVVGTDSPLY APILGFFAVT GIPTSGYLWY KAVQTANKDA EEQDRRDGFL
101: VTAIAAIGSI FEYTNGRAVF GVVGTDSPLY APILGFFAVT GIPTSGYLWY KAVQTANKDA EEQDRRDGFL
001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
Arabidopsis Description
AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.