Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, golgi, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- golgi 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G265600.1 | Wheat | nucleus | 96.51 | 95.29 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 93.94 | 93.77 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 92.11 | 91.61 |
| Os09t0481300-01 | Rice | nucleus | 58.9 | 60.91 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 59.63 | 59.96 |
| Zm00001d005997_P002 | Maize | plastid | 58.72 | 59.48 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 43.12 | 58.6 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 49.54 | 49.63 |
| GSMUA_Achr10P... | Banana | cytosol | 27.89 | 30.16 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 32.66 | 29.92 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 30.83 | 28.28 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 19.27 | 26.25 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.41 | 25.07 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 18.17 | 24.81 |
| CDY24192 | Canola | plastid | 13.76 | 24.75 |
| Bra026434.1-P | Field mustard | nucleus | 22.2 | 24.44 |
| CDX89333 | Canola | nucleus | 22.2 | 24.44 |
| CDX94330 | Canola | nucleus | 21.47 | 23.83 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 26.79 | 23.78 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.17 | 23.57 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.77 | 23.04 |
| AT5G56210.1 | Thale cress | nucleus | 21.1 | 22.59 |
| CDY17403 | Canola | nucleus | 11.19 | 22.1 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 11.19 | 22.1 |
| KRH56393 | Soybean | cytosol | 23.67 | 21.98 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 20.55 | 21.96 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 17.8 | 21.95 |
| AT4G26455.1 | Thale cress | nucleus | 19.63 | 21.88 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 11.19 | 21.86 |
| PGSC0003DMT400056956 | Potato | nucleus | 23.85 | 21.74 |
| CDX82542 | Canola | plastid | 17.61 | 21.67 |
| KRH62532 | Soybean | endoplasmic reticulum | 22.94 | 21.37 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.63 | 20.66 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G257000.1 | EnsemblPlantsGene:TraesCS5A01G257000 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | SEG:seg |
| MapMan:20.4.2.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:472343789..472347557
Molecular Weight (calculated)
57918.9 Da
IEP (calculated)
4.879
GRAVY (calculated)
-0.572
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGANSVGS VGESPPPLSP PGRPAAKGRG LRRWRRIPRE HHDDDGGSPA GPVAASAAAG AASAEVDLAQ LHKRRLPVGA DAPKGKQEAA AEEDSPVASV
101: ESSFVPPEAP PSPSPAPALT RLDPDLGLLI ASAGFSVGAG GADSDNSDDR TSKSSTALPR HDFSLAGFGR DRERARSRAP GAAAHAKNLR TARARGAGAR
201: AVSAASSTVE PENSRSSVES DLRSTGAAHA RKSSAGISSN GVHKFLYTDG DHSDDEAPSE HLRSAAGGFY KENGSAVGRM AMGNGDLYAH DHGFHEGSIG
301: KGENGGIHSG LDPYADSISM LQSAQEALEN ELQMFVEIGK ESSDNSTDNS DENEWSSSPN CEDFSEEISE KLKLLESKLE EASLLIDEKD SRILELDTLN
401: KTKPGETALY NSKLLSLQSE VDQLLMEKME ADIQCFILKR ASEAWQPQTE GQGALQEAQK TLSEDHKQLE VKLRHTENRA RTLEDLVEKL ESQCKELSNA
501: SEVLKLQAGA SRASLFCSVQ LVLLCIAVWT FVARFLPSPP EFVPT
101: ESSFVPPEAP PSPSPAPALT RLDPDLGLLI ASAGFSVGAG GADSDNSDDR TSKSSTALPR HDFSLAGFGR DRERARSRAP GAAAHAKNLR TARARGAGAR
201: AVSAASSTVE PENSRSSVES DLRSTGAAHA RKSSAGISSN GVHKFLYTDG DHSDDEAPSE HLRSAAGGFY KENGSAVGRM AMGNGDLYAH DHGFHEGSIG
301: KGENGGIHSG LDPYADSISM LQSAQEALEN ELQMFVEIGK ESSDNSTDNS DENEWSSSPN CEDFSEEISE KLKLLESKLE EASLLIDEKD SRILELDTLN
401: KTKPGETALY NSKLLSLQSE VDQLLMEKME ADIQCFILKR ASEAWQPQTE GQGALQEAQK TLSEDHKQLE VKLRHTENRA RTLEDLVEKL ESQCKELSNA
501: SEVLKLQAGA SRASLFCSVQ LVLLCIAVWT FVARFLPSPP EFVPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.