Factsheet for TraesCS4B01G280300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, golgi, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G278800.1	Wheat	cytosol, golgi, peroxisome	99.41	99.41
TraesCS4A01G023200.1	Wheat	cytosol, golgi, peroxisome	98.82	98.82
Os03t0356484-01	Rice	cytosol, golgi, peroxisome	87.57	85.55
Zm00001d047461_P001	Maize	extracellular, mitochondrion	81.66	81.18
OQU92576	Sorghum	cytosol, golgi, peroxisome	79.88	79.41
HORVU4Hr1G074140.2	Barley	plastid	94.08	73.95
TraesCS1B01G252000.1	Wheat	cytosol, golgi, peroxisome	66.27	68.29
GSMUA_Achr5P08180_001	Banana	unclear	63.91	65.85
Solyc11g065100.1.1	Tomato	plastid	62.72	62.35
PGSC0003DMT400080258	Potato	cytosol, nucleus, peroxisome	61.54	61.18
AT3G57090.2	Thale cress	cytosol	61.54	61.18
CDY35339	Canola	cytosol	59.76	60.48
CDX77006	Canola	cytosol	58.58	59.28
VIT_08s0007g05550.t01	Wine grape	cytosol	58.58	59.28
Bra034268.1-P	Field mustard	cytosol	36.69	59.05
KRH66798	Soybean	cytosol, nucleus, peroxisome	57.4	58.08
PGSC0003DMT400011821	Potato	cytosol, nucleus, peroxisome	57.4	58.08
Solyc12g099770.1.1	Tomato	cytosol, nucleus, peroxisome	57.4	58.08
Bra007301.1-P	Field mustard	cytosol	57.99	57.65
VIT_06s0009g03660.t01	Wine grape	cytosol, nucleus, peroxisome	56.21	56.89
KRH73559	Soybean	cytosol, endoplasmic reticulum, peroxisome	55.62	55.29
VIT_08s0007g05560.t01	Wine grape	cytosol	54.44	54.76
KRH14565	Soybean	cytosol	55.03	54.71
CDX97191	Canola	extracellular	54.44	53.8
CDX69682	Canola	cytosol, nucleus, peroxisome	54.44	53.49
PGSC0003DMT400020987	Potato	cytosol, nucleus, peroxisome	52.66	53.29
Bra008891.1-P	Field mustard	cytosol	53.85	53.22
KRG95120	Soybean	cytosol, nucleus, peroxisome	56.8	53.04
CDX91164	Canola	cytosol	53.25	52.94
Bra023375.1-P	Field mustard	cytosol	52.66	52.66
CDX85689	Canola	cytosol, golgi, peroxisome	52.66	52.35
Solyc10g079550.1.1	Tomato	plastid	52.66	51.74
AT5G12390.1	Thale cress	cytosol	49.7	50.3
CDX72070	Canola	endoplasmic reticulum, golgi, plasma membrane	57.99	39.84

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.6.2.2	InterPro:Fis1	InterPro:Fis1_TPR_C	InterPro:Fis1_TPR_N	InterPro:Fis1_cytosol
GO:GO:0000266	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	InterPro:IPR011990	PFAM:PF14852	PFAM:PF14853	PIRSF:PIRSF008835	PANTHER:PTHR13247
PANTHER:PTHR13247:SF2	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS4B01G280300	EnsemblPlants:TraesCS4B01G280300.1
TIGR:cd12212	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:562933223..562939206

Molecular Weight (calculated)

18667.3 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.295

Length

169 amino acids

Sequence
(BLAST)

001: MDGHVGQFFE SVSSIFRGSD TLPVCDRDII AGCETEVAEA ANEEQKNDSL MRLSWALVHS RQPEDVNRGI GMLEASFGKS NSPLQTREKL YLLAVGHYRN
101: GDYTRSRELL ERCLEVQPHW RQALTLERLL EEKTKRDGMI GMAIVTGAFG LVGLVAGGII AAASSSRKK

Best Arabidopsis Sequence Match ( AT5G12390.1 )
(BLAST)

001: MDAAIGKVFD SVSDFFSGAA SASADEFPLC DSDIISGCEK ELAEAQDEGR KKECIMRLSW ALVHSKMPSD IQRGIAMLEA LVVNDTSAMK LREKLYLLAL
101: GYYRSGDFSR SRDCIERCLE VEPESGQAQA LKKAIEDRIV KDGVIGVGIA VTAVGVVAGI AAAILRS

Arabidopsis Description

FIS1BMitochondrial fission 1 protein [Source:UniProtKB/TrEMBL;Acc:A0A178U9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.