Factsheet for GSMUA_Achr5P08180_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
cytosol 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0383000-01	Rice	cytosol	78.05	78.05
TraesCS1A01G239800.1	Wheat	plastid	76.83	76.83
TraesCS1B01G252000.1	Wheat	cytosol, golgi, peroxisome	76.83	76.83
TraesCS1D01G240000.1	Wheat	cytosol, golgi, peroxisome	76.83	76.83
Zm00001d009978_P001	Maize	plastid	75.0	75.0
Solyc12g099770.1.1	Tomato	cytosol, nucleus, peroxisome	75.0	73.65
PGSC0003DMT400011821	Potato	cytosol, nucleus, peroxisome	75.0	73.65
Os01t0951800-01	Rice	plasma membrane	73.17	73.62
EES19450	Sorghum	cytosol, nucleus, peroxisome	73.17	73.62
Solyc11g065100.1.1	Tomato	plastid	75.61	72.94
KRH66798	Soybean	cytosol, nucleus, peroxisome	72.56	71.26
VIT_06s0009g03660.t01	Wine grape	cytosol, nucleus, peroxisome	72.56	71.26
PGSC0003DMT400080258	Potato	cytosol, nucleus, peroxisome	73.78	71.18
VIT_08s0007g05550.t01	Wine grape	cytosol	71.95	70.66
CDY35339	Canola	cytosol	70.12	68.86
Bra034268.1-P	Field mustard	cytosol	43.9	68.57
AT3G57090.2	Thale cress	cytosol	70.73	68.24
CDX77006	Canola	cytosol	68.9	67.66
Bra007301.1-P	Field mustard	cytosol	70.12	67.65
Os03t0356484-01	Rice	cytosol, golgi, peroxisome	70.73	67.05
VIT_08s0007g05560.t01	Wine grape	cytosol	67.07	65.48
KRH14565	Soybean	cytosol	67.68	65.29
KRH73559	Soybean	cytosol, endoplasmic reticulum, peroxisome	67.68	65.29
KRG95120	Soybean	cytosol, nucleus, peroxisome	71.95	65.19
TraesCS4A01G023200.1	Wheat	cytosol, golgi, peroxisome	66.46	64.5
TraesCS4D01G278800.1	Wheat	cytosol, golgi, peroxisome	66.46	64.5
TraesCS4B01G280300.1	Wheat	cytosol, golgi, peroxisome	65.85	63.91
Zm00001d047461_P001	Maize	extracellular, mitochondrion	65.85	63.53
OQU92576	Sorghum	cytosol, golgi, peroxisome	65.85	63.53
PGSC0003DMT400020987	Potato	cytosol, nucleus, peroxisome	64.63	63.47
Solyc10g079550.1.1	Tomato	plastid	64.63	61.63
CDX97191	Canola	extracellular	61.59	59.06
CDX69682	Canola	cytosol, nucleus, peroxisome	61.59	58.72
Bra008891.1-P	Field mustard	cytosol	60.98	58.48
CDX91164	Canola	cytosol	59.15	57.06
AT5G12390.1	Thale cress	cytosol	57.93	56.89
Bra023375.1-P	Field mustard	cytosol	58.54	56.8
CDX85689	Canola	cytosol, golgi, peroxisome	58.54	56.47
HORVU4Hr1G074140.2	Barley	plastid	64.63	49.3
CDX72070	Canola	endoplasmic reticulum, golgi, plasma membrane	70.12	46.75

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.6.2.2	InterPro:Fis1	InterPro:Fis1_TPR_C	InterPro:Fis1_TPR_N	InterPro:Fis1_cytosol
GO:GO:0000266	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016559	EnsemblPlantsGene:GSMUA_Achr5G08180_001	EnsemblPlants:GSMUA_Achr5P08180_001
EnsemblPlants:GSMUA_Achr5T08180_001	InterPro:IPR011990	UniProt:M0SWP7	PFAM:PF14852	PFAM:PF14853	PIRSF:PIRSF008835
PANTHER:PTHR13247	PANTHER:PTHR13247:SF9	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029481BB
SEG:seg	:	:	:	:	:

Description

tetratricopeptide repeat containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G08180_001]

Coordinates

chr5:-:5924098..5928643

Molecular Weight (calculated)

18064.6 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.221

Length

164 amino acids

Sequence
(BLAST)

001: MDAKIREFFD SVGSFFSGGD NIPWCDRDII AGCEREVAES GNAESKNESL MRLSWALVHS RHPEDVNRGI AMLEASLDNS ASPLQSREKL YLLAVGYYRN
101: GDYPRSRQLL DRCLEIAPDW RQAQTLRKVV EDRIAKDGVI GIGIAATAVG LLVGGIAAVV ARKK

Best Arabidopsis Sequence Match ( AT3G57090.1 )
(BLAST)

001: MDAKIGQFFD SVGTFFSGSD KIPWCDGDVI AGCEREVREA TDSGTEDLKK ECLMRLSWAL VHSRQTEDVQ RGIAMLEASL ESSAPPLEDR EKLYLLAVGY
101: YRSGNYSRSR QLVDRCIEMQ ADWRQALVLK KTIEDKITKD GVIGIGITAT AFGAVGLIAG GIVAAMSRKK

Arabidopsis Description

FIS1AMitochondrial fission 1 protein A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.