CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66798	Soybean	cytosol, nucleus, peroxisome	91.16	98.8
VIT_08s0007g05550.t01	Wine grape	cytosol	73.48	79.64
Bra034268.1-P	Field mustard	cytosol	44.2	76.19
CDY35339	Canola	cytosol	67.96	73.65
VIT_08s0007g05560.t01	Wine grape	cytosol	67.96	73.21
CDX77006	Canola	cytosol	66.85	72.46
GSMUA_Achr5P08180_001	Banana	unclear	65.19	71.95
Os01t0951800-01	Rice	plasma membrane	64.64	71.78
Os05t0383000-01	Rice	cytosol	64.09	70.73
TraesCS1B01G252000.1	Wheat	cytosol, golgi, peroxisome	63.54	70.12
TraesCS1A01G239800.1	Wheat	plastid	63.54	70.12
TraesCS1D01G240000.1	Wheat	cytosol, golgi, peroxisome	63.54	70.12
PGSC0003DMT400020987	Potato	cytosol, nucleus, peroxisome	62.98	68.26
Zm00001d009978_P001	Maize	plastid	60.77	67.07
EES19450	Sorghum	cytosol, nucleus, peroxisome	60.22	66.87
Solyc10g079550.1.1	Tomato	plastid	63.54	66.86
AT3G57090.2	Thale cress	cytosol	61.88	65.88
Bra007301.1-P	Field mustard	cytosol	61.88	65.88
KRH73559	Soybean	cytosol, endoplasmic reticulum, peroxisome	56.91	60.59
Os03t0356484-01	Rice	cytosol, golgi, peroxisome	56.91	59.54
KRH14565	Soybean	cytosol	55.8	59.41
TraesCS4D01G278800.1	Wheat	cytosol, golgi, peroxisome	53.59	57.4
OQU92576	Sorghum	cytosol, golgi, peroxisome	53.59	57.06
TraesCS4A01G023200.1	Wheat	cytosol, golgi, peroxisome	53.04	56.8
TraesCS4B01G280300.1	Wheat	cytosol, golgi, peroxisome	53.04	56.8
Zm00001d047461_P001	Maize	extracellular, mitochondrion	53.04	56.47
CDX72070	Canola	endoplasmic reticulum, golgi, plasma membrane	61.33	45.12
HORVU4Hr1G074140.2	Barley	plastid	51.93	43.72

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100306722	MapMan:13.6.2.2	EMBL:ACUP02012082	EMBL:BT090963	UniProt:C6T0K9
InterPro:Fis1	InterPro:Fis1_TPR_C	InterPro:Fis1_TPR_N	InterPro:Fis1_cytosol	EnsemblPlantsGene:GLYMA_19G131600	GO:GO:0000266
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	InterPro:IPR011990	EnsemblPlants:KRG95120	ProteinID:KRG95120
ProteinID:KRG95120.1	PFAM:PF14852	PFAM:PF14853	PIRSF:PIRSF008835	PANTHER:PTHR13247	PANTHER:PTHR13247:SF9
SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001B154D9	:	:

Description

hypothetical protein

Coordinates

chr19:+:39215223..39218976

Molecular Weight (calculated)

20090.2 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.206

Length

181 amino acids

Sequence
(BLAST)

001: MDAKFGSLFE TIGNFFTGGE QIPWCDRDVI AGCEREVAEA ANGDSEERKN ESIMRLSWAL VHSRQKEDIQ RGIAMLETSL GNDKSPLHQR EKLYLLAVGY
101: YRSNDYGRSR QLVEQCLEIA PDWRQALSLK KIVEDRIAKA LTKELQMFVV SMPDGVIGIG ITATAVGLIV GGIATALARR S

Best Arabidopsis Sequence Match ( AT3G57090.1 )
(BLAST)

001: MDAKIGQFFD SVGTFFSGSD KIPWCDGDVI AGCEREVREA TDSGTEDLKK ECLMRLSWAL VHSRQTEDVQ RGIAMLEASL ESSAPPLEDR EKLYLLAVGY
101: YRSGNYSRSR QLVDRCIEMQ ADWRQALVLK KTIEDKITKD GVIGIGITAT AFGAVGLIAG GIVAAMSRKK

Arabidopsis Description

FIS1AMitochondrial fission 1 protein A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.