Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra007301.1-P | Field mustard | cytosol | 68.7 | 99.41 |
AT3G57090.2 | Thale cress | cytosol | 59.35 | 85.88 |
CDY35339 | Canola | cytosol | 51.22 | 75.45 |
CDX77006 | Canola | cytosol | 50.41 | 74.25 |
VIT_08s0007g05550.t01 | Wine grape | cytosol | 48.37 | 71.26 |
GSMUA_Achr5P08180_001 | Banana | unclear | 46.75 | 70.12 |
Os05t0383000-01 | Rice | cytosol | 46.34 | 69.51 |
TraesCS1D01G240000.1 | Wheat | cytosol, golgi, peroxisome | 45.94 | 68.9 |
TraesCS1B01G252000.1 | Wheat | cytosol, golgi, peroxisome | 45.94 | 68.9 |
TraesCS1A01G239800.1 | Wheat | plastid | 45.94 | 68.9 |
VIT_08s0007g05560.t01 | Wine grape | cytosol | 46.75 | 68.45 |
Zm00001d009978_P001 | Maize | plastid | 45.53 | 68.29 |
EES19450 | Sorghum | cytosol, nucleus, peroxisome | 45.12 | 68.1 |
KRH66798 | Soybean | cytosol, nucleus, peroxisome | 45.53 | 67.07 |
Os01t0951800-01 | Rice | plasma membrane | 41.87 | 63.19 |
PGSC0003DMT400020987 | Potato | cytosol, nucleus, peroxisome | 42.28 | 62.28 |
KRG95120 | Soybean | cytosol, nucleus, peroxisome | 45.12 | 61.33 |
Os03t0356484-01 | Rice | cytosol, golgi, peroxisome | 42.68 | 60.69 |
Solyc10g079550.1.1 | Tomato | plastid | 41.87 | 59.88 |
CDX91164 | Canola | cytosol | 41.06 | 59.41 |
CDX85689 | Canola | cytosol, golgi, peroxisome | 40.65 | 58.82 |
Zm00001d047461_P001 | Maize | extracellular, mitochondrion | 40.65 | 58.82 |
TraesCS4A01G023200.1 | Wheat | cytosol, golgi, peroxisome | 40.24 | 58.58 |
TraesCS4D01G278800.1 | Wheat | cytosol, golgi, peroxisome | 40.24 | 58.58 |
CDX97191 | Canola | extracellular | 40.65 | 58.48 |
CDX69682 | Canola | cytosol, nucleus, peroxisome | 40.65 | 58.14 |
TraesCS4B01G280300.1 | Wheat | cytosol, golgi, peroxisome | 39.84 | 57.99 |
OQU92576 | Sorghum | cytosol, golgi, peroxisome | 39.43 | 57.06 |
HORVU4Hr1G074140.2 | Barley | plastid | 42.68 | 48.84 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:13.6.2.2 | GO:A0A078C5F7 | EnsemblPlants:CDX72070 | ProteinID:CDX72070 | ProteinID:CDX72070.1 |
InterPro:Fis1 | InterPro:Fis1_TPR_C | InterPro:Fis1_TPR_N | InterPro:Fis1_cytosol | GO:GO:0000266 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005739 | GO:GO:0005777 | GO:GO:0007005 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016559 | EnsemblPlantsGene:GSBRNA2T00155867001 | InterPro:IPR011990 | PFAM:PF14852 |
PFAM:PF14853 | PANTHER:PTHR13247 | PANTHER:PTHR13247:SF9 | SUPFAM:SSF48452 | TMHMM:TMhelix | InterPro:TPR-like_helical_dom_sf |
UniParc:UPI0004EE0CA8 | SEG:seg | : | : | : | : |
Description
BnaC08g28040D
Coordinates
chrLK031795:-:2206378..2210640
Molecular Weight (calculated)
27121.8 Da
IEP (calculated)
7.967
GRAVY (calculated)
-0.139
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKIEGCDYF TMLNLLGLGL SINFCVAQNL YKISINPNIF QNFSNLSLSK NSMFDFISTG PPVFFCENQK KRKSKEMDAK IGKFFDSVGS FFSGGDKIPW
101: SEGDVIAGCE REVREATNSG NEGLKKECLM RLSWALVHSH QQDDVQRGID MLEASLANSA PPLEDREKLY LLAVGYYRSG DCSKSRQLID RCIEMQPDWR
201: QALVLKKCIE DKITKDGVIG IGITASAVGA VGLIAGGIVA ALARKK
101: SEGDVIAGCE REVREATNSG NEGLKKECLM RLSWALVHSH QQDDVQRGID MLEASLANSA PPLEDREKLY LLAVGYYRSG DCSKSRQLID RCIEMQPDWR
201: QALVLKKCIE DKITKDGVIG IGITASAVGA VGLIAGGIVA ALARKK
001: MDAKIGQFFD SVGTFFSGSD KIPWCDGDVI AGCEREVREA TDSGTEDLKK ECLMRLSWAL VHSRQTEDVQ RGIAMLEASL ESSAPPLEDR EKLYLLAVGY
101: YRSGNYSRSR QLVDRCIEMQ ADWRQALVLK KTIEDKITKD GVIGIGITAT AFGAVGLIAG GIVAAMSRKK
101: YRSGNYSRSR QLVDRCIEMQ ADWRQALVLK KTIEDKITKD GVIGIGITAT AFGAVGLIAG GIVAAMSRKK
Arabidopsis Description
FIS1AMitochondrial fission 1 protein A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.