CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85689	Canola	cytosol, golgi, peroxisome	95.88	95.88
CDX97191	Canola	extracellular	89.41	88.89
CDX69682	Canola	cytosol, nucleus, peroxisome	89.41	88.37
AT5G12390.1	Thale cress	cytosol	83.53	85.03
Solyc12g099770.1.1	Tomato	cytosol, nucleus, peroxisome	64.12	65.27
PGSC0003DMT400011821	Potato	cytosol, nucleus, peroxisome	64.12	65.27
VIT_06s0009g03660.t01	Wine grape	cytosol, nucleus, peroxisome	62.94	64.07
PGSC0003DMT400080258	Potato	cytosol, nucleus, peroxisome	61.76	61.76
CDY35339	Canola	cytosol	60.0	61.08
Solyc11g065100.1.1	Tomato	plastid	60.59	60.59
CDX77006	Canola	cytosol	58.24	59.28
TraesCS1D01G240000.1	Wheat	cytosol, golgi, peroxisome	57.06	59.15
TraesCS1B01G252000.1	Wheat	cytosol, golgi, peroxisome	57.06	59.15
TraesCS1A01G239800.1	Wheat	plastid	57.06	59.15
GSMUA_Achr5P08180_001	Banana	unclear	57.06	59.15
Os05t0383000-01	Rice	cytosol	55.29	57.32
Zm00001d009978_P001	Maize	plastid	53.53	55.49
KRH73559	Soybean	cytosol, endoplasmic reticulum, peroxisome	55.29	55.29
Os01t0951800-01	Rice	plasma membrane	52.94	55.21
KRH14565	Soybean	cytosol	54.71	54.71
EES19450	Sorghum	cytosol, nucleus, peroxisome	51.18	53.37
TraesCS4A01G023200.1	Wheat	cytosol, golgi, peroxisome	52.94	53.25
TraesCS4B01G280300.1	Wheat	cytosol, golgi, peroxisome	52.94	53.25
TraesCS4D01G278800.1	Wheat	cytosol, golgi, peroxisome	52.94	53.25
Os03t0356484-01	Rice	cytosol, golgi, peroxisome	53.53	52.6
Zm00001d047461_P001	Maize	extracellular, mitochondrion	51.18	51.18
OQU92576	Sorghum	cytosol, golgi, peroxisome	50.59	50.59
HORVU4Hr1G074140.2	Barley	plastid	52.35	41.4
CDX72070	Canola	endoplasmic reticulum, golgi, plasma membrane	59.41	41.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.6.2.2	GO:A0A078DRM8	EnsemblPlants:CDX91164	ProteinID:CDX91164	ProteinID:CDX91164.1
InterPro:Fis1	InterPro:Fis1_TPR_C	InterPro:Fis1_TPR_N	InterPro:Fis1_cytosol	GO:GO:0000266	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00151962001
InterPro:IPR011990	PFAM:PF14852	PFAM:PF14853	PIRSF:PIRSF008835	PANTHER:PTHR13247	PANTHER:PTHR13247:SF9
SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE52BE	SEG:seg	:

Description

BnaC02g04330D

Coordinates

chrLK031865:+:1169124..1170253

Molecular Weight (calculated)

18177.8 Da

IEP (calculated)

4.528

GRAVY (calculated)

0.068

Length

170 amino acids

Sequence
(BLAST)

001: MDATIGKVFD SVSGFFSGAA SGSADEFPLC DTDIISGCEK ELAEAQKGQD EGLKKECIMR LSWALVHSKT PADIQRGISM LEASVVSDTS PMNLREKLYL
101: VALGYYRSGD FSRSRECIER CLEVEPEWGQ AQTLKTAIED RIVKADGVIG VGIAVTAVGV VAGIAAALLR

Best Arabidopsis Sequence Match ( AT5G12390.1 )
(BLAST)

001: MDAAIGKVFD SVSDFFSGAA SASADEFPLC DSDIISGCEK ELAEAQDEGR KKECIMRLSW ALVHSKMPSD IQRGIAMLEA LVVNDTSAMK LREKLYLLAL
101: GYYRSGDFSR SRDCIERCLE VEPESGQAQA LKKAIEDRIV KDGVIGVGIA VTAVGVVAGI AAAILRS

Arabidopsis Description

FIS1BMitochondrial fission 1 protein [Source:UniProtKB/TrEMBL;Acc:A0A178U9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.