Factsheet for PGSC0003DMT400011821

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g099770.1.1	Tomato	cytosol, nucleus, peroxisome	100.0	100.0
PGSC0003DMT400080258	Potato	cytosol, nucleus, peroxisome	84.43	82.94
VIT_06s0009g03660.t01	Wine grape	cytosol, nucleus, peroxisome	82.63	82.63
GSMUA_Achr5P08180_001	Banana	unclear	73.65	75.0
Os05t0383000-01	Rice	cytosol	71.86	73.17
TraesCS1D01G240000.1	Wheat	cytosol, golgi, peroxisome	68.26	69.51
TraesCS1B01G252000.1	Wheat	cytosol, golgi, peroxisome	68.26	69.51
TraesCS1A01G239800.1	Wheat	plastid	68.26	69.51
Os01t0951800-01	Rice	plasma membrane	67.66	69.33
PGSC0003DMT400020987	Potato	cytosol, nucleus, peroxisome	68.26	68.26
KRH73559	Soybean	cytosol, endoplasmic reticulum, peroxisome	69.46	68.24
KRH14565	Soybean	cytosol	68.86	67.65
Zm00001d009978_P001	Maize	plastid	64.67	65.85
EES19450	Sorghum	cytosol, nucleus, peroxisome	64.07	65.64
Bra023375.1-P	Field mustard	cytosol	65.27	64.5
CDX91164	Canola	cytosol	65.27	64.12
CDX85689	Canola	cytosol, golgi, peroxisome	65.27	64.12
CDX97191	Canola	extracellular	65.27	63.74
CDX69682	Canola	cytosol, nucleus, peroxisome	65.27	63.37
Bra008891.1-P	Field mustard	cytosol	64.67	63.16
AT5G12390.1	Thale cress	cytosol	62.87	62.87
Os03t0356484-01	Rice	cytosol, golgi, peroxisome	61.08	58.96
Zm00001d047461_P001	Maize	extracellular, mitochondrion	59.28	58.24
TraesCS4A01G023200.1	Wheat	cytosol, golgi, peroxisome	58.68	57.99
TraesCS4D01G278800.1	Wheat	cytosol, golgi, peroxisome	58.68	57.99
OQU92576	Sorghum	cytosol, golgi, peroxisome	58.68	57.65
TraesCS4B01G280300.1	Wheat	cytosol, golgi, peroxisome	58.08	57.4
HORVU4Hr1G074140.2	Barley	plastid	56.89	44.19

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102599821	MapMan:13.6.2.2	InterPro:Fis1	InterPro:Fis1_TPR_C	InterPro:Fis1_TPR_N
InterPro:Fis1_cytosol	GO:GO:0000266	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016559	InterPro:IPR011990
UniProt:M1A087	PFAM:PF14852	PFAM:PF14853	EnsemblPlantsGene:PGSC0003DMG400004644	PGSC:PGSC0003DMG400004644	EnsemblPlants:PGSC0003DMT400011821
PIRSF:PIRSF008835	PANTHER:PTHR13247	PANTHER:PTHR13247:SF9	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000276A9C8	RefSeq:XP_006349799.1	SEG:seg	:	:	:

Description

Binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004644]

Coordinates

chr12:+:60360702..60364416

Molecular Weight (calculated)

18122.8 Da

IEP (calculated)

5.341

GRAVY (calculated)

-0.080

Length

167 amino acids

Sequence
(BLAST)

001: MDAKIGKFFD SIGDFFTGGD QIPWCDSDIV AGCEREVAEA EKGSSDDLKS ECIMRLSWAL VHSRRPEDIQ RGIAMLEASL GGSSSPLQMR EKLYLLAVGY
101: YRSGDFPRSR QLVDRCLEIA PDWRQALTLK KTIEEKITKD GVIGIGIAAT AVGVLVGGIA AALARKG

Best Arabidopsis Sequence Match ( AT3G57090.1 )
(BLAST)

001: MDAKIGQFFD SVGTFFSGSD KIPWCDGDVI AGCEREVREA TDSGTEDLKK ECLMRLSWAL VHSRQTEDVQ RGIAMLEASL ESSAPPLEDR EKLYLLAVGY
101: YRSGNYSRSR QLVDRCIEMQ ADWRQALVLK KTIEDKITKD GVIGIGITAT AFGAVGLIAG GIVAAMSRKK

Arabidopsis Description

FIS1AMitochondrial fission 1 protein A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.