Factsheet for PGSC0003DMT400080258

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065100.1.1	Tomato	plastid	94.71	94.71
PGSC0003DMT400011821	Potato	cytosol, nucleus, peroxisome	82.94	84.43
VIT_06s0009g03660.t01	Wine grape	cytosol, nucleus, peroxisome	78.24	79.64
GSMUA_Achr5P08180_001	Banana	unclear	71.18	73.78
Os05t0383000-01	Rice	cytosol	68.82	71.34
PGSC0003DMT400020987	Potato	cytosol, nucleus, peroxisome	67.06	68.26
TraesCS1B01G252000.1	Wheat	cytosol, golgi, peroxisome	65.29	67.68
TraesCS1A01G239800.1	Wheat	plastid	65.29	67.68
TraesCS1D01G240000.1	Wheat	cytosol, golgi, peroxisome	65.29	67.68
KRH73559	Soybean	cytosol, endoplasmic reticulum, peroxisome	66.47	66.47
EES19450	Sorghum	cytosol, nucleus, peroxisome	63.53	66.26
Os01t0951800-01	Rice	plasma membrane	63.53	66.26
KRH14565	Soybean	cytosol	65.88	65.88
Zm00001d009978_P001	Maize	plastid	62.94	65.24
Bra023375.1-P	Field mustard	cytosol	61.76	62.13
CDX91164	Canola	cytosol	61.76	61.76
TraesCS4B01G280300.1	Wheat	cytosol, golgi, peroxisome	61.18	61.54
TraesCS4D01G278800.1	Wheat	cytosol, golgi, peroxisome	61.18	61.54
CDX97191	Canola	extracellular	61.76	61.4
Os03t0356484-01	Rice	cytosol, golgi, peroxisome	62.35	61.27
CDX85689	Canola	cytosol, golgi, peroxisome	61.18	61.18
CDX69682	Canola	cytosol, nucleus, peroxisome	61.76	61.05
TraesCS4A01G023200.1	Wheat	cytosol, golgi, peroxisome	60.59	60.95
Bra008891.1-P	Field mustard	cytosol	61.18	60.82
AT5G12390.1	Thale cress	cytosol	58.82	59.88
Zm00001d047461_P001	Maize	extracellular, mitochondrion	58.24	58.24
OQU92576	Sorghum	cytosol, golgi, peroxisome	57.65	57.65
HORVU4Hr1G074140.2	Barley	plastid	60.0	47.44

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102599821	EntrezGene:102605591	MapMan:13.6.2.2	InterPro:Fis1	InterPro:Fis1_TPR_C
InterPro:Fis1_TPR_N	InterPro:Fis1_cytosol	GO:GO:0000266	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016559
InterPro:IPR011990	UniProt:M1D380	PFAM:PF14852	PFAM:PF14853	EnsemblPlantsGene:PGSC0003DMG400031242	PGSC:PGSC0003DMG400031242
EnsemblPlants:PGSC0003DMT400080258	PIRSF:PIRSF008835	PANTHER:PTHR13247	PANTHER:PTHR13247:SF9	SUPFAM:SSF48452	TMHMM:TMhelix
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294BA87	RefSeq:XP_006349799.1	RefSeq:XP_006362311.1	SEG:seg	:

Description

Binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031242]

Coordinates

chr11:-:36271326..36274325

Molecular Weight (calculated)

18654.5 Da

IEP (calculated)

7.137

GRAVY (calculated)

-0.157

Length

170 amino acids

Sequence
(BLAST)

001: MDAKIGNFFE SVGNFFTGGD QIPWCDSDIV TGCEREVAEV GKGSSDELKK ECIMRLSWAL VHSRRPEDVQ RGIAMLEASL GGSNSPLQMR EKIYLLAVGY
101: YRSGDYARSR QLVERCLEIE PEWRQALTLR KTIEDKITKD GVIGIGITAT AVTAVGLLAG GLVAALSRKK

Best Arabidopsis Sequence Match ( AT3G57090.1 )
(BLAST)

001: MDAKIGQFFD SVGTFFSGSD KIPWCDGDVI AGCEREVREA TDSGTEDLKK ECLMRLSWAL VHSRQTEDVQ RGIAMLEASL ESSAPPLEDR EKLYLLAVGY
101: YRSGNYSRSR QLVDRCIEMQ ADWRQALVLK KTIEDKITKD GVIGIGITAT AFGAVGLIAG GIVAAMSRKK

Arabidopsis Description

FIS1AMitochondrial fission 1 protein A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.