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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002138.1-P
Bra002835.1-P
Bra004430.1-P
Bra005686.1-P
Bra006442.1-P
Bra006659.1-P
Bra007735.1-P
Bra008891.1-P
Bra008966.1-P
Bra009736.1-P
Bra012143.1-P
Bra012289.1-P
Bra014252.1-P
Bra016411.1-P
Bra016623.1-P
Bra017936.1-P
Bra019447.1-P
Bra021442.1-P
Bra023141.1-P
Bra023144.1-P
Bra023375.1-P
Bra024788.1-P
Bra026013.1-P
Bra026026.1-P
Bra026245.1-P
Bra026434.1-P
Bra026567.1-P
Bra026696.1-P
Bra026911.1-P
Bra027425.1-P
Bra028903.1-P
Bra030492.1-P
Bra030853.1-P
Bra032980.1-P
Bra037108.1-P
Bra039397.1-P
Bra040428.1-P
Bra040432.1-P
Bra040752.1-P
Bra040794.1-P
Bra041028.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G26455.1 Bra026026.1-P AT1G16790.1 21798944
AT4G26455.1 Bra016623.1-P AT1G16950.1 21798944
AT4G26455.1 Bra026013.1-P AT1G16950.1 21798944
AT4G26455.1 Bra026696.1-P AT1G16950.1 21798944
AT4G26455.1 Bra023141.1-P AT1G30840.1 21798944
AT4G26455.1 Bra023144.1-P AT1G30840.1 21798944
AT4G26455.1 Bra040752.1-P AT1G47200.1 17600715
AT4G26455.1 Bra040794.1-P AT1G47200.1 17600715
AT4G26455.1 Bra014252.1-P AT1G50430.1 21798944
AT4G26455.1 Bra030492.1-P AT1G50430.1 21798944
AT4G26455.1 Bra041028.1-P AT1G50430.1 21798944
AT4G26455.1 Bra030853.1-P AT1G55535.1 21798944
AT4G26455.1 Bra037108.1-P AT1G55535.1 21798944
AT4G26455.1 Bra012289.1-P AT1G77350.1 21798944
AT4G26455.1 Bra016411.1-P AT1G77350.1 21798944
AT4G26455.1 Bra017936.1-P AT1G77350.1 21798944
AT4G26455.1 Bra024788.1-P AT2G03120.1 21798944
AT4G26455.1 Bra026567.1-P AT2G03120.1 21798944
AT4G26455.1 Bra004430.1-P AT2G47770.1 21798944
AT4G26455.1 Bra021442.1-P AT2G47770.1 21798944
AT4G26455.1 Bra027425.1-P AT3G13520.1 21798944
AT4G26455.1 Bra039397.1-P AT3G13520.1 21798944
AT4G26455.1 Bra032980.1-P AT3G27080.1 21798944
AT4G26455.1 Bra019447.1-P AT3G43520.1 21798944
AT4G26455.1 Bra040432.1-P AT3G63130.1 17600715
AT4G26455.1 Bra040432.1-P AT3G63130.1 19011093
AT4G26455.1 Bra040432.1-P AT3G63130.1 20579133
AT4G26455.1 Bra007735.1-P AT3G63200.1 21798944
AT4G26455.1 Bra040428.1-P AT3G63200.1 21798944
AT4G26455.1 Bra026245.1-P AT4G17340.1 21798944
AT4G26455.1 Bra026434.1-P AT4G26455.1 17600715
AT4G26455.1 Bra005686.1-P AT5G01430.1 21798944
AT4G26455.1 Bra028903.1-P AT5G01430.1 21798944
AT4G26455.1 Bra008966.1-P AT5G11390.1 18591351
AT4G26455.1 Bra008891.1-P AT5G12390.1 21798944
AT4G26455.1 Bra023375.1-P AT5G12390.1 21798944
AT4G26455.1 Bra002138.1-P AT5G18150.1 21798944
AT4G26455.1 Bra006442.1-P AT5G18150.1 21798944
AT4G26455.1 Bra026911.1-P AT5G19320.1 17600715
AT4G26455.1 Bra009736.1-P AT5G24130.1 21798944
AT4G26455.1 Bra040752.1-P AT5G43070.1 17600715
AT4G26455.1 Bra040794.1-P AT5G43070.1 17600715
AT4G26455.1 Bra002835.1-P AT5G56210.1 17600715
AT4G26455.1 Bra006659.1-P AT5G60460.1 21798944
AT4G26455.1 Bra012143.1-P AT5G67210.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89333 Canola nucleus 91.31 91.31
AT4G26455.1 Thale cress nucleus 55.56 56.24
Bra002835.1-P Field mustard cytosol, golgi, nucleus 21.62 38.77
Bra039387.1-P Field mustard cytosol, golgi, nucleus, plastid 23.43 29.0
VIT_19s0015g01790.t01 Wine grape nucleus 35.96 28.99
Bra001502.1-P Field mustard nucleus, plastid 23.43 26.24
KRH56393 Soybean cytosol 30.71 25.89
Solyc07g066170.2.1 Tomato nucleus 16.77 24.78
PGSC0003DMT400022426 Potato nucleus 29.29 24.74
KRH62532 Soybean endoplasmic reticulum 28.69 24.27
HORVU5Hr1G071910.1 Barley nucleus 24.85 22.45
Zm00001d020879_P001 Maize cytosol, golgi, nucleus, plastid 18.18 22.44
GSMUA_Achr4P01630_001 Banana cytosol, golgi, nucleus 26.87 22.35
TraesCS5D01G265600.1 Wheat nucleus 24.85 22.28
TraesCS5A01G257000.1 Wheat cytosol, golgi, nucleus, plastid 24.44 22.2
PGSC0003DMT400056956 Potato nucleus 26.67 22.07
TraesCS5B01G256500.1 Wheat cytosol, golgi, nucleus, plastid 24.24 21.98
EER96942 Sorghum cytosol, golgi, nucleus, plastid 24.04 21.96
Zm00001d005997_P002 Maize plastid 23.43 21.56
Os08t0497900-01 Rice nucleus 20.0 21.43
GSMUA_Achr10P... Banana cytosol 21.41 21.03
Os09t0481300-01 Rice nucleus 22.22 20.87
TraesCS2B01G351300.1 Wheat cytosol, golgi, nucleus 12.32 20.47
EES14314 Sorghum nucleus 20.81 20.36
GSMUA_Achr3P04120_001 Banana nucleus 24.24 20.2
TraesCS7D01G238200.1 Wheat cytosol 21.82 20.11
TraesCS7B01G135800.1 Wheat cytosol, golgi, nucleus 21.62 19.89
Os04t0471300-01 Rice cytosol, golgi, nucleus 12.12 19.87
TraesCS7A01G240200.1 Wheat cytosol 21.41 19.49
HORVU7Hr1G048940.3 Barley cytosol 21.62 18.74
Zm00001d003334_P001 Maize cytosol, nucleus, plastid 11.52 18.51
HORVU2Hr1G081800.3 Barley cytosol, nucleus 16.77 17.97
TraesCS2D01G332000.1 Wheat cytosol 18.18 17.65
OQU81760 Sorghum nucleus 15.15 17.61
TraesCS2A01G331000.1 Wheat cytosol 17.78 17.25
Zm00001d025667_P001 Maize cytosol 15.56 15.78
Protein Annotations
MapMan:20.4.2.1.2EnsemblPlantsGene:Bra026434EnsemblPlants:Bra026434.1EnsemblPlants:Bra026434.1-Pncoils:CoilGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005635GO:GO:0005737GO:GO:0006997GO:GO:0008150GO:GO:0009504GO:GO:0009987
GO:GO:0016043GO:GO:0046982UniProt:M4ECC5PANTHER:PTHR34562PANTHER:PTHR34562:SF1UniParc:UPI0002547190
SEG:seg:::::
Description
AT4G26455 (E=5e-135) WIP1 | WIP1 (WPP-DOMAIN INTERACTING PROTEIN 1); protein heterodimerization/ protein homodimerization
Coordinates
chrA01:+:9329704..9331303
Molecular Weight (calculated)
54093.9 Da
IEP (calculated)
4.596
GRAVY (calculated)
-0.683
Length
495 amino acids
Sequence
(BLAST)
001: MDLESESSAL ESIGDNGLIQ QASINTTAAA ADDDDDNGRS LDQGSFSDDS VKLVSTRSGG ENETSVEVGK ALNFGSHSPV LSKGRGLRKW RRIRRDLVKD
101: TSGDMENSKV LKRGLSGSAA HSHGNKQMLF QSPEFEQESQ GSVGSVNMLK SGGFDDARFM AGIGFSAGVV GLGKDDDRSS KSSTPMIISS GGQRGKDRVE
201: NSKKHRGESV EKENSHSSLE SDSRKPSGSM MMNHKGMIGD EADMNGETSK RNDDAEGEGE GEESINNNNG FSEEQDPLTE AIDGFLTLQE ALEKEVQQYR
301: EIGKETMTQH HEGASEISSP GSEIVALVNT VGQLEIKLEE TRSMLEVKES HIRELESTTN QNKRSCGESG NVSETVVEDI FRQKIEAEIE YLIYSRSVDN
401: LNHQMKRVET QQSLAEEQAY ETLNSLDKVQ TKAASLRNRA QDLQNECVET TGSIKKRACK ITSCFLIQLV LLLMVVMVFM SQLVPESSDI VVVPT
Best Arabidopsis Sequence Match ( AT4G26455.1 )
(BLAST)
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.