Factsheet for Bra027425.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13520.1	Bra030034.1-P	AT1G27300.1	21798944
AT3G13520.1	Bra032817.1-P	AT1G27300.1	21798944
AT3G13520.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G13520.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G13520.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G13520.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G13520.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23614	Canola	endoplasmic reticulum, extracellular, vacuole	100.0	100.0
CDY59257	Canola	endoplasmic reticulum, extracellular, vacuole	98.36	98.36
Bra039397.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	91.8	90.32
AT3G13520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	88.52	90.0
Bra019114.1-P	Field mustard	extracellular	55.74	57.63
VIT_06s0004g00440.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	55.74	57.63
Bra026448.1-P	Field mustard	endoplasmic reticulum, extracellular	54.1	55.93
Bra002808.1-P	Field mustard	extracellular	52.46	53.33
PGSC0003DMT400021604	Potato	endoplasmic reticulum, extracellular, vacuole	49.18	50.0
Solyc10g078580.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	45.9	46.67

Protein Annotations

EnsemblPlants:Bra027425.1	EnsemblPlants:Bra027425.1-P	EnsemblPlantsGene:Bra027425	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34114	PANTHER:PTHR34114:SF2	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0002547FA5
UniProt:M4EF63	MapMan:35.2	:	:	:	:

Description

AT3G13520 (E=1e-015) AGP12, ATAGP12 | AGP12 (ARABINOGALACTAN PROTEIN 12)

Coordinates

chrA05:-:20838615..20838800

Molecular Weight (calculated)

6268.9 Da

IEP (calculated)

6.582

GRAVY (calculated)

1.030

Length

61 amino acids

Sequence
(BLAST)

1: MESMKMKLMV VLMVAIVAFS AVGKAAAQTT ESPAPSPTSD ATMFVPALFA SVVALASGFL F

Best Arabidopsis Sequence Match ( AT3G13520.1 )
(BLAST)

1: MESMKMKLIV VLMVAIVAFS AVGNVAAQTE APAPSPTSDA AMFVPALFAS VAALASGFLF

Arabidopsis Description

AGP12Arabinogalactan peptide 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJD9]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.