Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027425.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 100.0 | 100.0 |
| CDY59257 | Canola | endoplasmic reticulum, extracellular, vacuole | 98.36 | 98.36 |
| CDY24179 | Canola | endoplasmic reticulum, extracellular, vacuole | 91.8 | 90.32 |
| AT3G13520.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 88.52 | 90.0 |
| CDX92761 | Canola | extracellular | 57.38 | 59.32 |
| CDY42745 | Canola | extracellular | 55.74 | 57.63 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 55.74 | 57.63 |
| CDY20717 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.74 | 56.67 |
| CDX89347 | Canola | endoplasmic reticulum, extracellular | 54.1 | 55.93 |
| CDY32859 | Canola | extracellular | 54.1 | 55.0 |
| CDY41806 | Canola | endoplasmic reticulum, extracellular, vacuole | 54.1 | 55.0 |
| CDY66048 | Canola | endoplasmic reticulum, extracellular, vacuole | 54.1 | 55.0 |
| CDX94346 | Canola | endoplasmic reticulum, extracellular | 52.46 | 54.24 |
| CDY32770 | Canola | extracellular | 52.46 | 53.33 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 49.18 | 50.0 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 45.9 | 46.67 |
Protein Annotations
| EnsemblPlants:CDY23614 | EnsemblPlantsGene:GSBRNA2T00023831001 | GO:A0A078GE82 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | ProteinID:CDY23614 | ProteinID:CDY23614.1 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0002547FA5 | UniProt:A0A078GE82 | MapMan:35.2 | : | : |
Description
BnaC05g39800DBnaC05g39800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GE82]
Coordinates
chrLK032145:+:404718..405117
Molecular Weight (calculated)
6268.9 Da
IEP (calculated)
6.582
GRAVY (calculated)
1.030
Length
61 amino acids
Sequence
(BLAST)
(BLAST)
1: MESMKMKLMV VLMVAIVAFS AVGKAAAQTT ESPAPSPTSD ATMFVPALFA SVVALASGFL F
1: MESMKMKLIV VLMVAIVAFS AVGNVAAQTE APAPSPTSDA AMFVPALFAS VAALASGFLF
Arabidopsis Description
AGP12Arabinogalactan peptide 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJD9]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.