Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89347 | Canola | endoplasmic reticulum, extracellular | 94.92 | 94.92 |
| AT4G26320.1 | Thale cress | extracellular | 84.75 | 84.75 |
| CDX92761 | Canola | extracellular | 83.05 | 83.05 |
| CDY42745 | Canola | extracellular | 81.36 | 81.36 |
| CDY32859 | Canola | extracellular | 69.49 | 68.33 |
| CDY32770 | Canola | extracellular | 67.8 | 66.67 |
| CDY20717 | Canola | endoplasmic reticulum, extracellular, vacuole | 66.1 | 65.0 |
| CDY41806 | Canola | endoplasmic reticulum, extracellular, vacuole | 66.1 | 65.0 |
| CDY66048 | Canola | endoplasmic reticulum, extracellular, vacuole | 66.1 | 65.0 |
| CDY24179 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.93 | 53.23 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 52.54 | 52.54 |
| CDY23614 | Canola | endoplasmic reticulum, extracellular, vacuole | 54.24 | 52.46 |
| CDY59257 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.54 | 50.82 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 44.07 | 43.33 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 40.68 | 40.0 |
Protein Annotations
| EnsemblPlants:CDX94346 | EnsemblPlantsGene:GSBRNA2T00157458001 | GO:A0A078DYQ2 | PANTHER:PTHR34114 | ProteinID:CDX94346 | ProteinID:CDX94346.1 |
| SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EB1C90 | MapMan:35.2 | : |
Description
BnaC01g18380D
Coordinates
chrLK031881:+:377273..377452
Molecular Weight (calculated)
6062.5 Da
IEP (calculated)
4.063
GRAVY (calculated)
1.029
Length
59 amino acids
Sequence
(BLAST)
(BLAST)
1: MDAMKMRLFE AVLVAMMAFS ALQQAAAVDA PAPSPTSDAS LSIPAFVATV ATLAVGFLF
1: MEAMKMRLFV AVLVAAMAFS AVQQAAAVEA PAPSPTSDAS LAIPAFFASV ATLAFGFLF
Arabidopsis Description
AGP13Arabinogalactan peptide 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9STQ3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.