Factsheet for VIT_06s0004g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13520.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT3G13520.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT3G13520.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT5G56540.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021604	Potato	endoplasmic reticulum, extracellular, vacuole	64.41	63.33
Solyc10g078580.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	62.71	61.67
AT4G26320.1	Thale cress	extracellular	61.02	61.02
CDX92761	Canola	extracellular	61.02	61.02
CDY66048	Canola	endoplasmic reticulum, extracellular, vacuole	61.02	60.0
CDY41806	Canola	endoplasmic reticulum, extracellular, vacuole	61.02	60.0
CDY20717	Canola	endoplasmic reticulum, extracellular, vacuole	61.02	60.0
AT3G13520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	59.32	58.33
Bra019114.1-P	Field mustard	extracellular	57.63	57.63
CDY42745	Canola	extracellular	57.63	57.63
CDY32859	Canola	extracellular	57.63	56.67
Bra027425.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	57.63	55.74
CDY23614	Canola	endoplasmic reticulum, extracellular, vacuole	57.63	55.74
CDY32770	Canola	extracellular	55.93	55.0
Bra002808.1-P	Field mustard	extracellular	55.93	55.0
Bra039397.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	57.63	54.84
CDY24179	Canola	endoplasmic reticulum, extracellular, vacuole	57.63	54.84
CDX89347	Canola	endoplasmic reticulum, extracellular	54.24	54.24
Bra026448.1-P	Field mustard	endoplasmic reticulum, extracellular	54.24	54.24
CDY59257	Canola	endoplasmic reticulum, extracellular, vacuole	55.93	54.1
AT1G55330.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	52.54	53.45
AT5G56540.1	Thale cress	extracellular	54.24	53.33
CDX94346	Canola	endoplasmic reticulum, extracellular	52.54	52.54

Protein Annotations

EntrezGene:100250052	wikigene:100250052	MapMan:35.2	ProteinID:CCB43811	ProteinID:CCB43811.1	UniProt:F6GUN4
EMBL:FN594951	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100250052	wikigene:LOC100250052
PANTHER:PTHR34114	PANTHER:PTHR34114:SF2	SignalP:SignalP-TM	TIGR:TC67561	TIGR:TC67631	TMHMM:TMhelix
UniParc:UPI00019835E8	ArrayExpress:VIT_06s0004g00440	EnsemblPlantsGene:VIT_06s0004g00440	EnsemblPlants:VIT_06s0004g00440.t01	unigene:Vvi.24583	RefSeq:XP_002285727
RefSeq:XP_002285727.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:593285..594067

Molecular Weight (calculated)

6015.7 Da

IEP (calculated)

6.493

GRAVY (calculated)

1.395

Length

59 amino acids

Sequence
(BLAST)

1: MEAMKMKLFL AVVMMILAVS AVQPAAAATA PAPAPASDAA IFVPTFFASL TALAFGFLL

Best Arabidopsis Sequence Match ( AT5G56540.1 )
(BLAST)

1: MEAMKMKLYV VVLVAVIAFS TVHQTVAAVD APAPSPTSDA SSFIPTFFAS VAVMAFGFFF

Arabidopsis Description

AGP14Arabinogalactan peptide 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVC0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.