Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- golgi 3
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89347 | Canola | endoplasmic reticulum, extracellular | 100.0 | 100.0 |
| AT4G26320.1 | Thale cress | extracellular | 86.44 | 86.44 |
| Bra019114.1-P | Field mustard | extracellular | 83.05 | 83.05 |
| Bra002808.1-P | Field mustard | extracellular | 62.71 | 61.67 |
| Bra039397.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 57.63 | 54.84 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 54.24 | 54.24 |
| Bra027425.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.93 | 54.1 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 44.07 | 43.33 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 40.68 | 40.0 |
Protein Annotations
| EnsemblPlants:Bra026448.1 | EnsemblPlants:Bra026448.1-P | EnsemblPlantsGene:Bra026448 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002547182 | UniProt:M4ECD9 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT4G26320 (E=8e-022) AGP13 | AGP13 (arabinogalactan protein 13)
Coordinates
chrA01:-:9263344..9263523
Molecular Weight (calculated)
6133.6 Da
IEP (calculated)
4.539
GRAVY (calculated)
1.010
Length
59 amino acids
Sequence
(BLAST)
(BLAST)
1: MDAMKMRLFE AVLVAMMAFS ALQHAAAVEA PAPSPTSDAS LSIPAFVATV ATLAFGFLF
1: MEAMKMRLFV AVLVAAMAFS AVQQAAAVEA PAPSPTSDAS LAIPAFFASV ATLAFGFLF
Arabidopsis Description
AGP13Arabinogalactan peptide 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9STQ3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.