Factsheet for Bra039397.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13520.1	Bra030034.1-P	AT1G27300.1	21798944
AT3G13520.1	Bra032817.1-P	AT1G27300.1	21798944
AT3G13520.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G13520.1	Bra013361.1-P	AT4G19030.1	21798944
AT3G13520.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G13520.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G13520.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24179	Canola	endoplasmic reticulum, extracellular, vacuole	98.39	98.39
AT3G13520.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	90.32	93.33
Bra027425.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	90.32	91.8
Bra026448.1-P	Field mustard	endoplasmic reticulum, extracellular	54.84	57.63
VIT_06s0004g00440.t01	Wine grape	endoplasmic reticulum, extracellular, vacuole	54.84	57.63
Bra019114.1-P	Field mustard	extracellular	53.23	55.93
Bra002808.1-P	Field mustard	extracellular	53.23	55.0
PGSC0003DMT400021604	Potato	endoplasmic reticulum, extracellular, vacuole	45.16	46.67
Solyc10g078580.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	43.55	45.0

Protein Annotations

EnsemblPlants:Bra039397.1	EnsemblPlants:Bra039397.1-P	EnsemblPlantsGene:Bra039397	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR34114	PANTHER:PTHR34114:SF2	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000253E94A
UniProt:M4FE76	MapMan:35.2	:	:	:	:

Description

AT3G13520 (E=7e-013) AGP12, ATAGP12 | AGP12 (ARABINOGALACTAN PROTEIN 12)

Coordinates

chrScaffold000164:-:275021..275209

Molecular Weight (calculated)

6249.8 Da

IEP (calculated)

6.582

GRAVY (calculated)

1.081

Length

62 amino acids

Sequence
(BLAST)

1: MESMKMKLMV VLTVAIVAFS AVGKVAAQTA ESPAPSPTSD AAAMFVPALF ASVAALASGF LF

Best Arabidopsis Sequence Match ( AT3G13520.1 )
(BLAST)

1: MESMKMKLIV VLMVAIVAFS AVGNVAAQTE APAPSPTSDA AMFVPALFAS VAALASGFLF

Arabidopsis Description

AGP12Arabinogalactan peptide 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJD9]
SUBAcon: [endoplasmic reticulum,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.