Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 86.67 | 86.67 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 63.33 | 64.41 |
| AT5G56540.1 | Thale cress | extracellular | 55.0 | 55.0 |
| AT3G13520.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 51.67 | 51.67 |
| CDY20717 | Canola | endoplasmic reticulum, extracellular, vacuole | 51.67 | 51.67 |
| CDX92761 | Canola | extracellular | 50.0 | 50.85 |
| CDY59257 | Canola | endoplasmic reticulum, extracellular, vacuole | 51.67 | 50.82 |
| AT1G55330.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 48.33 | 50.0 |
| CDY66048 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.0 | 50.0 |
| CDY41806 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.0 | 50.0 |
| Bra027425.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 50.0 | 49.18 |
| CDY23614 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.0 | 49.18 |
| AT4G26320.1 | Thale cress | extracellular | 48.33 | 49.15 |
| Bra019114.1-P | Field mustard | extracellular | 48.33 | 49.15 |
| CDY42745 | Canola | extracellular | 48.33 | 49.15 |
| Bra002808.1-P | Field mustard | extracellular | 48.33 | 48.33 |
| CDY32770 | Canola | extracellular | 48.33 | 48.33 |
| CDY32859 | Canola | extracellular | 48.33 | 48.33 |
| CDY24179 | Canola | endoplasmic reticulum, extracellular, vacuole | 46.67 | 45.16 |
| Bra039397.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 46.67 | 45.16 |
| CDX94346 | Canola | endoplasmic reticulum, extracellular | 43.33 | 44.07 |
| CDX89347 | Canola | endoplasmic reticulum, extracellular | 43.33 | 44.07 |
| Bra026448.1-P | Field mustard | endoplasmic reticulum, extracellular | 43.33 | 44.07 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021604 | EnsemblPlantsGene:PGSC0003DMG400008381 | EntrezGene:102584353 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | PGSC:PGSC0003DMG400008381 | RefSeq:XP_006362250.1 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI00029519DE | UniProt:M1AFE4 | MapMan:35.2 | : | : |
Description
Arabinogalactan peptide 14 [Source:PGSC_GENE;Acc:PGSC0003DMG400008381]
Coordinates
chr10:-:59129740..59130225
Molecular Weight (calculated)
6248.0 Da
IEP (calculated)
3.738
GRAVY (calculated)
1.522
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAMKMNVLL VVMMVVLVAL SEIQNVVAAD APAPAPASDA TLFVPTVFAS LVVLAFGILF
1: MEAMKMKLYV VVLVAVIAFS TVHQTVAAVD APAPSPTSDA SSFIPTFFAS VAVMAFGFFF
Arabidopsis Description
AGP14Arabinogalactan peptide 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVC0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.