Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 4
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42745 | Canola | extracellular | 100.0 | 100.0 |
| AT4G26320.1 | Thale cress | extracellular | 83.05 | 83.05 |
| Bra026448.1-P | Field mustard | endoplasmic reticulum, extracellular | 83.05 | 83.05 |
| Bra002808.1-P | Field mustard | extracellular | 64.41 | 63.33 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 57.63 | 57.63 |
| Bra027425.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 57.63 | 55.74 |
| Bra039397.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.93 | 53.23 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 49.15 | 48.33 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 45.76 | 45.0 |
Protein Annotations
| EnsemblPlants:Bra019114.1 | EnsemblPlants:Bra019114.1-P | EnsemblPlantsGene:Bra019114 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | SEG:seg | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI00025411D5 |
| UniProt:M4DRH1 | MapMan:35.2 | : | : | : | : |
Description
AT4G26320 (E=6e-011) AGP13 | AGP13 (arabinogalactan protein 13)
Coordinates
chrA03:-:26275413..26275592
Molecular Weight (calculated)
6128.7 Da
IEP (calculated)
4.426
GRAVY (calculated)
1.081
Length
59 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAMKMKLFV AVLVVGMAFS AMQQAAAVEA PAPSPTSDAS LSIPTFVATV VTMAFGFLF
1: MEAMKMRLFV AVLVAAMAFS AVQQAAAVEA PAPSPTSDAS LAIPAFFASV ATLAFGFLF
Arabidopsis Description
AGP13Arabinogalactan peptide 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9STQ3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.