Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 6
- vacuole 4
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026448.1-P | Field mustard | endoplasmic reticulum, extracellular | 86.44 | 86.44 |
| CDX89347 | Canola | endoplasmic reticulum, extracellular | 86.44 | 86.44 |
| CDX92761 | Canola | extracellular | 84.75 | 84.75 |
| CDX94346 | Canola | endoplasmic reticulum, extracellular | 84.75 | 84.75 |
| Bra019114.1-P | Field mustard | extracellular | 83.05 | 83.05 |
| CDY42745 | Canola | extracellular | 83.05 | 83.05 |
| AT5G56540.1 | Thale cress | extracellular | 71.19 | 70.0 |
| AT3G13520.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 66.1 | 65.0 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 61.02 | 61.02 |
| AT1G55330.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 59.32 | 60.34 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 49.15 | 48.33 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 45.76 | 45.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828738 | ProteinID:AEE85185.1 | EMBL:AF195894 | Symbol:AGP13 | ArrayExpress:AT4G26320 |
| EnsemblPlantsGene:AT4G26320 | RefSeq:AT4G26320 | TAIR:AT4G26320 | RefSeq:AT4G26320-TAIR-G | EnsemblPlants:AT4G26320.1 | TAIR:AT4G26320.1 |
| EMBL:BT024797 | ProteinID:CAB38961.1 | ProteinID:CAB79487.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0031225 | RefSeq:NP_194362.1 | PO:PO:0000230 | PO:PO:0000263 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009046 | PO:PO:0020100 | PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | UniProt:Q9STQ3 |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000009D4F4 | SEG:seg | : | : |
Description
AGP13Arabinogalactan peptide 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9STQ3]
Coordinates
chr4:-:13317053..13317640
Molecular Weight (calculated)
6052.5 Da
IEP (calculated)
4.426
GRAVY (calculated)
1.159
Length
59 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAMKMRLFV AVLVAAMAFS AVQQAAAVEA PAPSPTSDAS LAIPAFFASV ATLAFGFLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.