Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 4
- extracellular 5
- plastid 1
- vacuole 4
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G13520.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 74.14 | 71.67 |
| AT4G26320.1 | Thale cress | extracellular | 60.34 | 59.32 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 53.45 | 52.54 |
| AT5G56540.1 | Thale cress | extracellular | 53.45 | 51.67 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 50.0 | 48.33 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 50.0 | 48.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:841979 | UniProt:A0A178W6X6 | ProteinID:AAG51571.1 | ProteinID:AEE33229.1 | Symbol:AGP21 |
| ArrayExpress:AT1G55330 | EnsemblPlantsGene:AT1G55330 | RefSeq:AT1G55330 | TAIR:AT1G55330 | RefSeq:AT1G55330-TAIR-G | EnsemblPlants:AT1G55330.1 |
| TAIR:AT1G55330.1 | EMBL:AY087780 | EMBL:AY093045 | EMBL:BT003426 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031225 | RefSeq:NP_564686.1 |
| ProteinID:OAP14237.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR34114 |
| PANTHER:PTHR34114:SF2 | UniProt:Q9C8A4 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000000C00F | SEG:seg |
Description
AGP21ATAGP21 [Source:UniProtKB/TrEMBL;Acc:A0A178W6X6]
Coordinates
chr1:-:20648465..20648891
Molecular Weight (calculated)
5945.5 Da
IEP (calculated)
4.426
GRAVY (calculated)
1.312
Length
58 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAMKMKMMV FIMVVAVAFS AATAATVEAP APSPTSDAAM FVPALFASVV ALASGFIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.