Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 6
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039397.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 93.33 | 90.32 |
| CDY24179 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.33 | 90.32 |
| Bra027425.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 90.0 | 88.52 |
| CDY23614 | Canola | endoplasmic reticulum, extracellular, vacuole | 90.0 | 88.52 |
| CDY59257 | Canola | endoplasmic reticulum, extracellular, vacuole | 88.33 | 86.89 |
| AT1G55330.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 71.67 | 74.14 |
| AT4G26320.1 | Thale cress | extracellular | 65.0 | 66.1 |
| AT5G56540.1 | Thale cress | extracellular | 60.0 | 60.0 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 58.33 | 59.32 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 51.67 | 51.67 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 48.33 | 48.33 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820554 | UniProt:A0A178V8D6 | ProteinID:AEE75367.1 | EMBL:AF195893 | Symbol:AGP12 |
| ArrayExpress:AT3G13520 | EnsemblPlantsGene:AT3G13520 | RefSeq:AT3G13520 | TAIR:AT3G13520 | RefSeq:AT3G13520-TAIR-G | EnsemblPlants:AT3G13520.1 |
| TAIR:AT3G13520.1 | EMBL:AY059924 | EMBL:AY081598 | EMBL:AY086039 | ProteinID:BAB01759.1 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031225 |
| RefSeq:NP_566458.1 | ProteinID:OAP01675.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | UniProt:Q9LJD9 | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI00000A6B47 | : | : | : | : |
Description
AGP12Arabinogalactan peptide 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJD9]
Coordinates
chr3:+:4408925..4409734
Molecular Weight (calculated)
6089.6 Da
IEP (calculated)
4.426
GRAVY (calculated)
1.193
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MESMKMKLIV VLMVAIVAFS AVGNVAAQTE APAPSPTSDA AMFVPALFAS VAALASGFLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.