Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012567.1-P | |
| Bra013361.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56540.1 | Bra012567.1-P | AT4G19030.1 | 21798944 |
| AT5G56540.1 | Bra013361.1-P | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32770 | Canola | extracellular | 100.0 | 100.0 |
| AT5G56540.1 | Thale cress | extracellular | 71.67 | 71.67 |
| Bra019114.1-P | Field mustard | extracellular | 63.33 | 64.41 |
| Bra026448.1-P | Field mustard | endoplasmic reticulum, extracellular | 61.67 | 62.71 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 55.0 | 55.93 |
| Bra039397.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 55.0 | 53.23 |
| Bra027425.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 53.33 | 52.46 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 48.33 | 48.33 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 45.0 | 45.0 |
Protein Annotations
| EnsemblPlants:Bra002808.1 | EnsemblPlants:Bra002808.1-P | EnsemblPlantsGene:Bra002808 | GO:GO:0005575 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016049 | GO:GO:0030154 |
| GO:GO:0040007 | GO:GO:0048767 | PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | SEG:seg | SignalP:SignalP-TM |
| TMHMM:TMhelix | UniParc:UPI0002544A28 | UniProt:M4CF26 | MapMan:35.2 | : | : |
Description
arabinogalactan protein 14 [Source:TAIR;Acc:AT5G56540](projected from arabidopsis_thaliana,AT5G56540)
Coordinates
chrA10:+:7444562..7444744
Molecular Weight (calculated)
6159.8 Da
IEP (calculated)
6.447
GRAVY (calculated)
1.318
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MVAMKMKLFV AVLVAMIAFS AVQQSAAAVD APAPSPTSDA SSFIPTIFTS ISVLVVGLLF
1: MEAMKMKLYV VVLVAVIAFS TVHQTVAAVD APAPSPTSDA SSFIPTFFAS VAVMAFGFFF
Arabidopsis Description
AGP14Arabinogalactan peptide 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVC0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.