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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • plastid 2
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra002808.1-P Field mustard extracellular 100.0 100.0
CDY32859 Canola extracellular 95.0 95.0
CDY20717 Canola endoplasmic reticulum, extracellular, vacuole 80.0 80.0
CDY41806 Canola endoplasmic reticulum, extracellular, vacuole 80.0 80.0
CDY66048 Canola endoplasmic reticulum, extracellular, vacuole 80.0 80.0
AT5G56540.1 Thale cress extracellular 71.67 71.67
CDX94346 Canola endoplasmic reticulum, extracellular 66.67 67.8
CDX92761 Canola extracellular 63.33 64.41
CDY42745 Canola extracellular 63.33 64.41
CDX89347 Canola endoplasmic reticulum, extracellular 61.67 62.71
VIT_06s0004g00440.t01 Wine grape endoplasmic reticulum, extracellular, vacuole 55.0 55.93
CDY24179 Canola endoplasmic reticulum, extracellular, vacuole 55.0 53.23
CDY23614 Canola endoplasmic reticulum, extracellular, vacuole 53.33 52.46
CDY59257 Canola endoplasmic reticulum, extracellular, vacuole 51.67 50.82
PGSC0003DMT400021604 Potato endoplasmic reticulum, extracellular, vacuole 48.33 48.33
Solyc10g078580.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 45.0 45.0
Protein Annotations
EnsemblPlants:CDY32770EnsemblPlantsGene:GSBRNA2T00052831001GO:A0A078H2C3GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR34114PANTHER:PTHR34114:SF2ProteinID:CDY32770ProteinID:CDY32770.1SEG:segSignalP:SignalP-TM
TMHMM:TMhelixUniParc:UPI0002544A28UniProt:A0A078H2C3MapMan:35.2::
Description
BnaA10g10790DBnaA10g10790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2C3]
Coordinates
chrLK032299:-:197418..197662
Molecular Weight (calculated)
6159.8 Da
IEP (calculated)
6.447
GRAVY (calculated)
1.318
Length
60 amino acids
Sequence
(BLAST)
1: MVAMKMKLFV AVLVAMIAFS AVQQSAAAVD APAPSPTSDA SSFIPTIFTS ISVLVVGLLF
Best Arabidopsis Sequence Match ( AT5G56540.1 )
(BLAST)
1: MEAMKMKLYV VVLVAVIAFS TVHQTVAAVD APAPSPTSDA SSFIPTFFAS VAVMAFGFFF
Arabidopsis Description
AGP14Arabinogalactan peptide 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVC0]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.