Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56540.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT5G56540.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT5G56540.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT5G56540.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66048 | Canola | endoplasmic reticulum, extracellular, vacuole | 100.0 | 100.0 |
| CDY20717 | Canola | endoplasmic reticulum, extracellular, vacuole | 93.33 | 93.33 |
| CDY32859 | Canola | extracellular | 81.67 | 81.67 |
| CDY32770 | Canola | extracellular | 80.0 | 80.0 |
| AT5G56540.1 | Thale cress | extracellular | 78.33 | 78.33 |
| CDX92761 | Canola | extracellular | 66.67 | 67.8 |
| CDY42745 | Canola | extracellular | 66.67 | 67.8 |
| CDX94346 | Canola | endoplasmic reticulum, extracellular | 65.0 | 66.1 |
| CDX89347 | Canola | endoplasmic reticulum, extracellular | 63.33 | 64.41 |
| VIT_06s0004g00440.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 60.0 | 61.02 |
| CDY24179 | Canola | endoplasmic reticulum, extracellular, vacuole | 56.67 | 54.84 |
| CDY23614 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.0 | 54.1 |
| CDY59257 | Canola | endoplasmic reticulum, extracellular, vacuole | 53.33 | 52.46 |
| PGSC0003DMT400021604 | Potato | endoplasmic reticulum, extracellular, vacuole | 50.0 | 50.0 |
| Solyc10g078580.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 50.0 | 50.0 |
Protein Annotations
| EnsemblPlants:CDY41806 | EnsemblPlantsGene:GSBRNA2T00073704001 | GO:A0A078JEM3 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34114 | PANTHER:PTHR34114:SF2 | ProteinID:CDY41806 | ProteinID:CDY41806.1 | ProteinID:CDY66048.1 | SEG:seg |
| SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0004EE7C70 | UniProt:A0A078JEM3 | MapMan:35.2 | : |
Description
BnaC02g12170DBnaC02g12170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEM3]
Coordinates
chrLK032507:-:99094..99276
Molecular Weight (calculated)
6238.7 Da
IEP (calculated)
4.105
GRAVY (calculated)
1.225
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAMKMKLFI AVLVALIVFS AVEQSAAAVD APAPSPTSDA SSFIPTFFAS VTVLAFGLIF
1: MEAMKMKLYV VVLVAVIAFS TVHQTVAAVD APAPSPTSDA SSFIPTFFAS VAVMAFGFFF
Arabidopsis Description
AGP14Arabinogalactan peptide 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVC0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.