Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084737 | Potato | cytosol | 39.8 | 37.68 |
| KRH31520 | Soybean | cytosol | 28.06 | 36.18 |
| Solyc05g015640.2.1 | Tomato | cytosol | 36.73 | 35.64 |
| KRG97393 | Soybean | nucleus | 34.18 | 35.64 |
| Bra030034.1-P | Field mustard | cytosol | 35.2 | 34.85 |
| CDY03907 | Canola | cytosol | 34.18 | 34.54 |
| AT1G27300.1 | Thale cress | nucleus | 35.2 | 34.5 |
| CDY15722 | Canola | cytosol | 34.69 | 34.34 |
| CDY27605 | Canola | cytosol | 34.18 | 33.33 |
| CDX84933 | Canola | cytosol | 33.16 | 32.99 |
| Bra032817.1-P | Field mustard | nucleus | 33.16 | 32.34 |
| TraesCS2A01G346700.1 | Wheat | cytosol | 30.61 | 30.93 |
| TraesCS2B01G365000.1 | Wheat | cytosol | 30.1 | 30.73 |
| Os02t0509600-01 | Rice | plasma membrane | 32.65 | 30.33 |
| TraesCS2D01G345400.1 | Wheat | cytosol | 30.1 | 30.1 |
| HORVU2Hr1G084420.1 | Barley | cytosol | 28.57 | 29.17 |
| EES05123 | Sorghum | nucleus | 30.1 | 27.44 |
| Zm00001d050563_P001 | Maize | nucleus | 27.55 | 26.73 |
| KRH76090 | Soybean | nucleus | 15.31 | 26.09 |
| Zm00001d016570_P001 | Maize | cytosol | 28.57 | 26.05 |
Protein Annotations
| EntrezGene:100245446 | wikigene:100245446 | MapMan:35.2 | ProteinID:CBI27671 | ProteinID:CBI27671.3 | UniProt:D7TAZ8 |
| EMBL:FN595754 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0005802 | EntrezGene:LOC100245446 | wikigene:LOC100245446 | PANTHER:PTHR35280 | UniParc:UPI00015CCDEC |
| ArrayExpress:VIT_01s0010g03800 | EnsemblPlantsGene:VIT_01s0010g03800 | EnsemblPlants:VIT_01s0010g03800.t01 | unigene:Vvi.11539 | RefSeq:XP_002276787 | RefSeq:XP_002276787.1 |
Description
No Description!
Coordinates
chr1:-:21177722..21180041
Molecular Weight (calculated)
21588.0 Da
IEP (calculated)
4.752
GRAVY (calculated)
-0.336
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNVELLQLA IRRLADEKKN GRASVADDDL LSRLIFQLES LKEDGAIKQP KSSVEPNELH SPAVGEMEVK SMATNEVDAG SAEIGTEEII KELKKVERQN
101: SITHWLLSTM IVLILGWQLS EFSLILKVKE GLNHPFRSFG NLVIGLLKGP DNNGQDAEKQ SSSTKKPQIE TPPLPLRIPE LPHVDLPVLG LNGEGD
101: SITHWLLSTM IVLILGWQLS EFSLILKVKE GLNHPFRSFG NLVIGLLKGP DNNGQDAEKQ SSSTKKPQIE TPPLPLRIPE LPHVDLPVLG LNGEGD
001: MESSEDVENL SRAIEKLLHE KRKREASGDA FIEDADDQLF LSSLISQLES PNPKGKEDVI TGEEEEKEEE SADSSPSKGK SEGQRQLEES IEEIAKDIKK
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
101: VKKQNKITHV LLSATIILTL VWQLSEYSMI FMLKDRISHP VRSIGGMLNG MFKGKLRPIK NQLAGTSNSN DQNNHGNGSH TGPQLQVPEL LREFGFDDEE
Arabidopsis Description
F17L21.9 [Source:UniProtKB/TrEMBL;Acc:Q9FZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.