Factsheet for VIT_07s0130g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_16s0098g00760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT3G43520.1	VIT_16s0098g00760.t01	AT3G49530.1	21798944
AT3G43520.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	35.77	81.48
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	29.67	72.28
GSMUA_Achr3P05290_001	Banana	extracellular	32.11	71.17
AT2G26240.1	Thale cress	cytosol, extracellular	26.42	60.19
TraesCS2D01G507100.1	Wheat	golgi	45.53	54.37
TraesCS2A01G506400.1	Wheat	plastid	45.53	54.37
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	36.99	53.22
TraesCS2B01G534700.1	Wheat	golgi	44.31	52.91
EES12994	Sorghum	plastid	44.72	52.88
KRH19425	Soybean	plastid	45.94	49.56
KRH02516	Soybean	plastid	44.72	49.55
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.02	47.41
Zm00001d002028_P001	Maize	plastid	35.37	47.03
Solyc11g073240.1.1	Tomato	plastid	46.34	45.78
Bra007767.1-P	Field mustard	cytosol	23.58	44.27
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.02	43.84
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	15.45	43.18
PGSC0003DMT400040170	Potato	plastid	42.68	42.68
PGSC0003DMT400040171	Potato	plastid	42.68	42.68
Bra019447.1-P	Field mustard	plastid	37.8	42.47
CDY30952	Canola	plastid	37.8	42.47
HORVU2Hr1G112380.1	Barley	peroxisome	34.96	39.63
GSMUA_AchrUn_...	Banana	mitochondrion	15.04	39.36
CDY44845	Canola	plastid	37.4	39.32
AT3G43520.1	Thale cress	plastid	38.21	39.17
Os04t0653100-01	Rice	plasma membrane, plastid	46.34	37.13
Zm00001d026478_P001	Maize	extracellular, plastid	23.17	36.54

Protein Annotations

Gene3D:1.20.58.1140	EntrezGene:100244242	wikigene:100244242	MapMan:24.2.22	ProteinID:CCB51352	ProteinID:CCB51352.1
UniProt:F6HGK6	EMBL:FN595755	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100244242
wikigene:LOC100244242	PFAM:PF03647	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	TIGR:TC56118	TIGR:TC58149
InterPro:TMEM14	TMHMM:TMhelix	UniParc:UPI00019859D4	ArrayExpress:VIT_07s0130g00480	EnsemblPlantsGene:VIT_07s0130g00480	EnsemblPlants:VIT_07s0130g00480.t01
unigene:Vvi.396	RefSeq:XP_002267013	RefSeq:XP_002267013.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:20948314..20960159

Molecular Weight (calculated)

24582.2 Da

IEP (calculated)

8.817

GRAVY (calculated)

0.008

Length

246 amino acids

Sequence
(BLAST)

001: MAESVAISQS SLVLPHFGGP RALTGWRQSW IRFRASSPVI SHKSIAGLRQ TTVSSGIIAS AVSDSKAPAF IVESAGEEID VQPDTTDRAG SGSEGGNGGG
101: GGDGGGGGDG GGGGGGGGDH DNDDNKGEGG SDESNNKIAM SMSQKLTLGY AALVGVGGVM GYMKSGSQKS LAAGGLSALL LYYVYTQLPT RPAFASFLGL
201: GLSAALVGVM GSRFKKSGKL FPAGVVSLVS LVMTGGYLHG ILRSLH

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.