Factsheet for Solyc11g073240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g080090.2.1
Solyc03g120880.2.1
Solyc06g073050.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT3G43520.1	Solyc03g080090.2.1	AT3G49530.1	21798944
AT3G43520.1	Solyc06g073050.2.1	AT3G49530.1	21798944
AT3G43520.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G43520.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	51.0	74.27
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	29.32	67.59
GSMUA_Achr3P05290_001	Banana	extracellular	28.11	63.06
PGSC0003DMT400040170	Potato	plastid	62.25	63.01
PGSC0003DMT400040171	Potato	plastid	62.25	63.01
AT2G26240.1	Thale cress	cytosol, extracellular	27.31	62.96
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	24.5	60.4
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.91	49.63
Bra007767.1-P	Field mustard	cytosol	24.9	47.33
VIT_07s0130g00480.t01	Wine grape	plastid	45.78	46.34
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.91	45.89
KRH02516	Soybean	plastid	40.56	45.5
CDY30952	Canola	plastid	38.96	44.29
Bra019447.1-P	Field mustard	plastid	38.96	44.29
TraesCS2A01G506400.1	Wheat	plastid	36.14	43.69
TraesCS2D01G507100.1	Wheat	golgi	36.14	43.69
TraesCS2B01G534700.1	Wheat	golgi	35.74	43.2
KRH19425	Soybean	plastid	39.36	42.98
EES12994	Sorghum	plastid	35.74	42.79
Zm00001d002028_P001	Maize	plastid	29.72	40.0
CDY44845	Canola	plastid	37.35	39.74
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	13.65	38.64
AT3G43520.1	Thale cress	plastid	36.14	37.5
HORVU2Hr1G112380.1	Barley	peroxisome	30.12	34.56
GSMUA_AchrUn_...	Banana	mitochondrion	12.85	34.04
Zm00001d026478_P001	Maize	extracellular, plastid	20.08	32.05
Os04t0653100-01	Rice	plasma membrane, plastid	36.14	29.32

Protein Annotations

EnsemblPlants:Solyc11g073240.1.1	EnsemblPlantsGene:Solyc11g073240.1	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002769FDE	UniProt:K4DB30	MapMan:24.2.22	:	:	:

Description

No Description!

Coordinates

chr11:+:56270341..56271090

Molecular Weight (calculated)

25571.5 Da

IEP (calculated)

8.827

GRAVY (calculated)

0.124

Length

249 amino acids

Sequence
(BLAST)

001: MGEFLAISQS SIVLPNFRVQ AWSKRQLFIA HSQPLRSLHS SLHSLTTSHT VYPGLSAGST HFSLGVRASV VSVDSTMPTT FTVDPAGPGI DVLPEAGGGG
101: GDIGGANDDG GGRGDNSGNN NDGDNEGGSD EGEDHNSKKK MALSMSQKLT LGYAFLVGAG GFMGYLKSGS TKSLIAGGVS ASLLYAVYTM LPIQPVLASA
201: IGFVLSAGLV GVMGSRFLKS KKVFPAGVVS FVSFVMTGGY LHGILRSAH

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.