Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P24090_001 | Banana | extracellular, golgi, plasma membrane | 68.47 | 70.37 |
| AT2G26240.1 | Thale cress | cytosol, extracellular | 57.66 | 59.26 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 41.44 | 52.27 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 41.44 | 48.94 |
| CDY11499 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 55.86 | 45.93 |
| CDX76725 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 55.86 | 42.47 |
| PGSC0003DMT400040174 | Potato | cytosol, peroxisome, plastid | 63.06 | 40.94 |
| Bra007767.1-P | Field mustard | cytosol | 47.75 | 40.46 |
| KRH02516 | Soybean | plastid | 69.37 | 34.68 |
| KRH19425 | Soybean | plastid | 68.47 | 33.33 |
| VIT_07s0130g00480.t01 | Wine grape | plastid | 71.17 | 32.11 |
| PGSC0003DMT400040170 | Potato | plastid | 64.86 | 29.27 |
| PGSC0003DMT400040171 | Potato | plastid | 64.86 | 29.27 |
| CDY30952 | Canola | plastid | 55.86 | 28.31 |
| Bra019447.1-P | Field mustard | plastid | 55.86 | 28.31 |
| Solyc11g073240.1.1 | Tomato | plastid | 63.06 | 28.11 |
| CDY44845 | Canola | plastid | 55.86 | 26.5 |
| AT3G43520.1 | Thale cress | plastid | 56.76 | 26.25 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P05290_001 | EnsemblPlants:GSMUA_Achr3T05290_001 | EnsemblPlantsGene:GSMUA_Achr3G05290_001 | Gene3D:1.20.58.1140 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF5 | PFAM:PF03647 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000296C036 | UniProt:M0SBZ7 | MapMan:24.2.22 | : | : |
Description
UPF0136 membrane protein At2g26240 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05290_001]
Coordinates
chr3:+:3472675..3475697
Molecular Weight (calculated)
11292.1 Da
IEP (calculated)
10.513
GRAVY (calculated)
0.541
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSTSQLLT LGYAALLGAG GVMGFVKSGS QKSLVAGGVS AALLCHVYTQ LPERPLYASS LGLGTSVTLL AAMGSRYKKS GKVFPAGVVS LVSLIMAGGY
101: LHGILRSSKT L
101: LHGILRSSKT L
001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
Arabidopsis Description
FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.