Factsheet for GSMUA_AchrUn_randomP26240_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P03560_001
GSMUA_Achr2P11810_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr4P29170_001
GSMUA_Achr6P14800_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT3G43520.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT3G43520.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT3G43520.1	GSMUA_Achr11P...	AT3G49530.1	21798944
AT3G43520.1	GSMUA_Achr1P03560_001	AT3G49530.1	21798944
AT3G43520.1	GSMUA_Achr2P11810_001	AT3G49530.1	21798944
AT3G43520.1	GSMUA_Achr4P29170_001	AT3G49530.1	21798944
AT3G43520.1	GSMUA_AchrUn_...	AT3G49530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05290_001	Banana	extracellular	48.94	41.44
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	35.11	30.56
AT2G26240.1	Thale cress	cytosol, extracellular	30.85	26.85
Bra007767.1-P	Field mustard	cytosol	29.79	21.37
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	29.79	20.74
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	29.79	19.18
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	32.98	18.13
KRH02516	Soybean	plastid	39.36	16.67
KRH19425	Soybean	plastid	38.3	15.79
VIT_07s0130g00480.t01	Wine grape	plastid	39.36	15.04
PGSC0003DMT400040170	Potato	plastid	34.04	13.01
PGSC0003DMT400040171	Potato	plastid	34.04	13.01
Solyc11g073240.1.1	Tomato	plastid	34.04	12.85
CDY30952	Canola	plastid	29.79	12.79
Bra019447.1-P	Field mustard	plastid	29.79	12.79
AT3G43520.1	Thale cress	plastid	30.85	12.08
CDY44845	Canola	plastid	29.79	11.97
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	6.38	6.82

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP26240_001	EnsemblPlants:GSMUA_AchrUn_randomT26240_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG26240_001	Gene3D:1.20.58.1140	GO:GO:0005575	GO:GO:0016020
InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	UniParc:UPI000296E777	UniProt:M0UCI2
MapMan:35.2	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG26240_001]

Coordinates

chrchrUn_random:+:128908125..128908503

Molecular Weight (calculated)

10069.6 Da

IEP (calculated)

10.781

GRAVY (calculated)

0.340

Length

94 amino acids

Sequence
(BLAST)

1: MGIPIPIRHA NHSRFPFLLH SYVCSKQAFL RWKAKHLFSP IGILAAGGVM GCVKSGSQKS LVAGGVSAAL LCHVYTQLPE RPLYASSLGL GVRP

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.