Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- plasma membrane 1
- endoplasmic reticulum 1
- extracellular 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G43520.1 | GSMUA_Achr4P08270_001 | AT3G16310.1 | 21798944 |
| AT3G43520.1 | GSMUA_Achr4P15460_001 | AT3G16310.1 | 21798944 |
| AT3G43520.1 | GSMUA_Achr6P14800_001 | AT3G16310.1 | 21798944 |
| AT3G43520.1 | GSMUA_Achr11P... | AT3G49530.1 | 21798944 |
| AT3G43520.1 | GSMUA_Achr1P03560_001 | AT3G49530.1 | 21798944 |
| AT3G43520.1 | GSMUA_Achr2P11810_001 | AT3G49530.1 | 21798944 |
| AT3G43520.1 | GSMUA_Achr4P29170_001 | AT3G49530.1 | 21798944 |
| AT3G43520.1 | GSMUA_AchrUn_... | AT3G49530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P05290_001 | Banana | extracellular | 52.27 | 41.44 |
| GSMUA_Achr5P24090_001 | Banana | extracellular, golgi, plasma membrane | 43.18 | 35.19 |
| AT2G26240.1 | Thale cress | cytosol, extracellular | 31.82 | 25.93 |
| CDY11499 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 34.09 | 22.22 |
| Bra007767.1-P | Field mustard | cytosol | 32.95 | 22.14 |
| CDX76725 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 34.09 | 20.55 |
| PGSC0003DMT400040174 | Potato | cytosol, peroxisome, plastid | 38.64 | 19.88 |
| KRH02516 | Soybean | plastid | 47.73 | 18.92 |
| KRH19425 | Soybean | plastid | 45.45 | 17.54 |
| VIT_07s0130g00480.t01 | Wine grape | plastid | 43.18 | 15.45 |
| PGSC0003DMT400040170 | Potato | plastid | 40.91 | 14.63 |
| PGSC0003DMT400040171 | Potato | plastid | 40.91 | 14.63 |
| Solyc11g073240.1.1 | Tomato | plastid | 38.64 | 13.65 |
| CDY30952 | Canola | plastid | 32.95 | 13.24 |
| Bra019447.1-P | Field mustard | plastid | 32.95 | 13.24 |
| CDY44845 | Canola | plastid | 32.95 | 12.39 |
| AT3G43520.1 | Thale cress | plastid | 31.82 | 11.67 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 6.82 | 6.38 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP19930_001 | EnsemblPlants:GSMUA_AchrUn_randomT19930_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG19930_001 | Gene3D:1.10.10.1740 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM14 | PANTHER:PTHR12668 | PANTHER:PTHR12668:SF5 | PFAM:PF03647 | TMHMM:TMhelix |
| UniParc:UPI000296979A | UniProt:M0UAQ2 | MapMan:35.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19930_001]
Coordinates
chrchrUn_random:-:96749032..96749387
Molecular Weight (calculated)
9396.9 Da
IEP (calculated)
11.993
GRAVY (calculated)
0.430
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MCEERQPQVI SCRRGIGCVI VSRVHPASRM TFIRIIPGVR GTSVTLLAVM GSRNNTSGKV FPAGVVSLVS LIMAGGYLHG ILRSSKTL
001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH
Arabidopsis Description
FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.