Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 44.97 | 56.49 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 46.93 | 53.0 |
| KRH23409 | Soybean | mitochondrion | 45.25 | 48.94 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 44.97 | 48.64 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 44.97 | 48.06 |
| Bra027174.1-P | Field mustard | plastid | 44.41 | 47.6 |
| AT3G16310.1 | Thale cress | plastid | 43.58 | 47.42 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 29.89 | 47.35 |
| EES19830 | Sorghum | mitochondrion | 41.34 | 45.4 |
| Zm00001d038803_P001 | Maize | mitochondrion | 40.78 | 45.34 |
| TraesCS1D01G342600.1 | Wheat | plastid | 41.9 | 44.12 |
| HORVU1Hr1G076010.1 | Barley | plastid | 40.22 | 43.5 |
| Os05t0520100-00 | Rice | mitochondrion | 39.11 | 42.3 |
| Zm00001d010783_P001 | Maize | plastid | 40.78 | 42.2 |
| TraesCS3D01G274500.1 | Wheat | plastid | 36.03 | 40.95 |
| HORVU3Hr1G071060.1 | Barley | plastid | 35.47 | 40.71 |
| TraesCS3B01G308400.1 | Wheat | plastid | 35.75 | 40.63 |
| TraesCS3A01G274800.1 | Wheat | plastid | 34.64 | 39.62 |
| TraesCS1A01G340600.1 | Wheat | plastid | 35.75 | 37.87 |
| CDY30157 | Canola | plastid | 44.69 | 37.74 |
| Solyc03g120880.2.1 | Tomato | nucleus | 44.69 | 31.87 |
| CDX97739 | Canola | plastid | 44.41 | 23.84 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006810 |
| GO:GO:0006913 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0031965 | GO:GO:0051028 | EnsemblPlantsGene:GSMUA_Achr4G15460_001 |
| EnsemblPlants:GSMUA_Achr4P15460_001 | EnsemblPlants:GSMUA_Achr4T15460_001 | InterPro:IPR007846 | InterPro:IPR012677 | UniProt:M0SP61 | InterPro:Nucleoporin_NUP53 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PIRSF:PIRSF038119 | PFscan:PS51472 | PANTHER:PTHR21527 | PANTHER:PTHR21527:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | UniParc:UPI00029656D9 | SEG:seg | : |
Description
Nucleoporin NUP53, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G15460_001]
Coordinates
chr4:+:11682134..11686659
Molecular Weight (calculated)
37907.1 Da
IEP (calculated)
10.300
GRAVY (calculated)
-0.373
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPMPRSSK PTRLSPFFRD LASPISPHHR PVGRFATPGQ AAAVSALWKE NLAGSSADPP PPPVFTLDDR ADLSPEVGLG ELPPPSPVSP TSTRSRTPPP
101: RPNQKGYPSP SPSLSSSSFV LRTRAEVIGS GVANGRGQSP EGSIWMASPK ADGGEREMGQ GSPVDGVVES GALMVLPPPL SREIARPEPQ GYGVQNGGLD
201: ADEWVTVFGF SPDHTNLVLR EFEKCGVIVK HVPGPSDANW IHILYQNPYD AQKALKKNGM RLNSLLIVGV KPVDPVHRQL LKEKINRSNH GGFMVSLPSK
301: SAALNSSATS NSSGIVARSY QPKTSSNVTT GSFNRATGSI ATPAKSVVSK VMDLMFGI
101: RPNQKGYPSP SPSLSSSSFV LRTRAEVIGS GVANGRGQSP EGSIWMASPK ADGGEREMGQ GSPVDGVVES GALMVLPPPL SREIARPEPQ GYGVQNGGLD
201: ADEWVTVFGF SPDHTNLVLR EFEKCGVIVK HVPGPSDANW IHILYQNPYD AQKALKKNGM RLNSLLIVGV KPVDPVHRQL LKEKINRSNH GGFMVSLPSK
301: SAALNSSATS NSSGIVARSY QPKTSSNVTT GSFNRATGSI ATPAKSVVSK VMDLMFGI
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.