Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- endoplasmic reticulum 2
- plasma membrane 4
- extracellular 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 96.7 | 96.7 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 87.18 | 85.92 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 68.13 | 76.86 |
| KRG91806 | Soybean | plasma membrane | 73.26 | 73.8 |
| CDX72847 | Canola | plasma membrane | 72.16 | 72.43 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 71.79 | 72.32 |
| Bra016097.1-P | Field mustard | plasma membrane | 71.79 | 72.06 |
| CDX96363 | Canola | plasma membrane | 71.79 | 72.06 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 73.26 | 71.68 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 72.53 | 70.97 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 73.26 | 70.92 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 73.26 | 70.92 |
| Zm00001d033664_P001 | Maize | peroxisome | 71.79 | 70.76 |
| Bra003904.1-P | Field mustard | peroxisome | 71.79 | 70.76 |
| CDX82201 | Canola | peroxisome | 71.43 | 70.65 |
| Os03t0703900-01 | Rice | peroxisome | 69.6 | 68.59 |
| CDX75108 | Canola | plasma membrane | 68.86 | 68.36 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 71.79 | 68.29 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 69.96 | 68.21 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 70.33 | 68.09 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 71.06 | 68.07 |
| CDY48052 | Canola | plasma membrane | 68.5 | 68.0 |
| Bra038380.1-P | Field mustard | plasma membrane | 68.5 | 68.0 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 69.96 | 67.97 |
| GSMUA_Achr4P19040_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 55.31 | 60.89 |
| GSMUA_Achr4P12280_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 53.48 | 59.84 |
| GSMUA_Achr4P27330_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 54.95 | 59.06 |
| CDY03670 | Canola | peroxisome | 44.32 | 58.74 |
| GSMUA_Achr9P23350_001 | Banana | mitochondrion, plasma membrane | 52.38 | 58.61 |
| AT1G71940.2 | Thale cress | plasma membrane | 65.57 | 58.5 |
| Bra007997.1-P | Field mustard | plasma membrane | 43.96 | 58.25 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 70.7 | 56.43 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 71.43 | 43.05 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 69.23 | 41.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P04140_001 | EnsemblPlants:GSMUA_Achr6T04140_001 | EnsemblPlantsGene:GSMUA_Achr6G04140_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000294917E | UniProt:M0T412 | MapMan:35.1 | : | : | : |
Description
Uncharacterized membrane protein At4g09580 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04140_001]
Coordinates
chr6:+:2847405..2852256
Molecular Weight (calculated)
30785.4 Da
IEP (calculated)
9.989
GRAVY (calculated)
0.542
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPQRISIV RDEETAADDT PTAKKTLRAE SRVPLTRWEA AAAAAVFLIF AVGLFCILFT MPEAEYDKIL RVPRNLSDLR VLKDNLAVYA RDYQAKFVLG
101: YCSIYIFMQT FMIPGTIFLS LLAGALFGVI KGVILVVFSA TSGASSCYFL SKLIGRPLVS WMWPEKLRFF QSEIAKRRER LLNYMLFLRI TPSLPNTFIN
201: LASPIVDVPF CIFFLATLVG LVPASYITVR AGLALGDLKS VRDLYDFKTL AVLFLIGFVF IFPTILKRKR TYE
101: YCSIYIFMQT FMIPGTIFLS LLAGALFGVI KGVILVVFSA TSGASSCYFL SKLIGRPLVS WMWPEKLRFF QSEIAKRRER LLNYMLFLRI TPSLPNTFIN
201: LASPIVDVPF CIFFLATLVG LVPASYITVR AGLALGDLKS VRDLYDFKTL AVLFLIGFVF IFPTILKRKR TYE
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.