CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82201	Canola	peroxisome	58.72	96.38
CDX96363	Canola	plasma membrane	57.84	96.32
CDX72847	Canola	plasma membrane	57.62	95.96
CDY03670	Canola	peroxisome	39.96	87.86
AT1G71940.2	Thale cress	plasma membrane	52.98	78.43
Solyc06g065400.2.1	Tomato	plasma membrane	48.79	78.37
KRG91806	Soybean	plasma membrane	46.8	78.23
CDX75108	Canola	plasma membrane	47.46	78.18
PGSC0003DMT400067170	Potato	plasma membrane	48.57	78.01
CDY48052	Canola	plasma membrane	47.24	77.82
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	47.9	77.78
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	45.7	76.38
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	45.47	72.28
GSMUA_Achr6P04140_001	Banana	plasma membrane	43.05	71.43
GSMUA_Achr6P06250_001	Banana	plasma membrane	43.05	71.43
GSMUA_Achr7P11860_001	Banana	peroxisome	42.83	70.04
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	37.31	69.83
CDX90446	Canola	cytosol	29.8	64.29
Os03t0703900-01	Rice	peroxisome	38.85	63.54
EER93600	Sorghum	peroxisome, plasma membrane, plastid	39.07	63.44
Zm00001d033664_P001	Maize	peroxisome	38.63	63.18
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	47.02	62.28
TraesCS4A01G272200.1	Wheat	plasma membrane	38.41	62.14
TraesCS4D01G039000.1	Wheat	plasma membrane	38.63	62.06
TraesCS4B01G041800.1	Wheat	plasma membrane	38.41	61.92
CDY54781	Canola	plasma membrane	34.44	60.7
CDX78801	Canola	plasma membrane	34.0	59.92
CDX68293	Canola	cytosol, nucleus, plasma membrane, plastid	57.4	56.4
CDY01492	Canola	plasma membrane	16.56	45.45
CDY01491	Canola	golgi, peroxisome, plasma membrane	22.52	43.22

Protein Annotations

EnsemblPlants:CDY36672	EnsemblPlantsGene:GSBRNA2T00062434001	GO:A0A078HFT8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF3	PFAM:PF09335	ProteinID:CDY36672	ProteinID:CDY36672.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE44C0	UniProt:A0A078HFT8	MapMan:35.1	:

Description

BnaCnng07740DBnaCnng07740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFT8]

Coordinates

chrLK032381:-:99550..102417

Molecular Weight (calculated)

51158.0 Da

IEP (calculated)

10.112

GRAVY (calculated)

0.068

Length

453 amino acids

Sequence
(BLAST)

001: MALNSESLEE FSFPLLASQT SGTDSPPLWK HSPEKTRRGY EDGRLIIGRY DDDSQRKSFS YVETRSLWNV NAEEKMDMLW EEFNEEPPPP PRSQSLRIYL
101: GGDKKSSLFP DESSAVGCGM KLTKKRPSTK MKMSTNVLVL MRVLKKILVI RSSFQRSLAK THPRSLQWIN PAAKLPMLHS VMAPTRNLIR DEELGAISDD
201: DDSPSGKRSK LDRFPLSRWE LAVSLGVFLV FSSGLFCIYI TMPAAEFGKL KLPRSISDLR LLKDNLANYA NKYPAQFVLG YCATYIFMQT FMIPGTIFMS
301: LLAGALFGVV KGVILVVFNA TAGATCCFFL SKLIGRPLIT WLWPDKLRFF QAEIGKRRDK LLNYMLFLRI TPTLPNLFIN LASPIVDVPF HVFFLATLVG
401: LIPAAYITVR AGLAIGDLKS VKDLYDFKTL SVLFLIGFIS ILPTILKRKK IYE

Best Arabidopsis Sequence Match ( AT1G71940.1 )
(BLAST)

001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.