Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- extracellular 1
- golgi 1
- plasma membrane 3
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016097.1-P | Field mustard | plasma membrane | 99.63 | 99.63 |
| CDX96363 | Canola | plasma membrane | 99.63 | 99.63 |
| CDX82201 | Canola | peroxisome | 94.85 | 93.48 |
| CDY03670 | Canola | peroxisome | 62.87 | 83.01 |
| KRG91806 | Soybean | plasma membrane | 77.94 | 78.23 |
| CDX75108 | Canola | plasma membrane | 79.04 | 78.18 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 80.88 | 78.01 |
| CDY48052 | Canola | plasma membrane | 78.68 | 77.82 |
| AT1G71940.2 | Thale cress | plasma membrane | 87.5 | 77.78 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 80.51 | 77.66 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 78.68 | 76.7 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 76.1 | 76.38 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 75.74 | 72.28 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 72.43 | 72.16 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 72.43 | 72.16 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 63.6 | 71.49 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 70.96 | 69.68 |
| CDX90446 | Canola | cytosol | 50.74 | 65.71 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 65.07 | 63.44 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 65.07 | 63.21 |
| Os03t0703900-01 | Rice | peroxisome | 64.34 | 63.18 |
| Zm00001d033664_P001 | Maize | peroxisome | 64.34 | 63.18 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 65.07 | 62.99 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 64.71 | 62.41 |
| CDY54781 | Canola | plasma membrane | 58.46 | 61.87 |
| CDX78801 | Canola | plasma membrane | 58.09 | 61.48 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 76.1 | 60.53 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 95.96 | 57.62 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 90.81 | 53.58 |
| CDY01492 | Canola | plasma membrane | 27.94 | 46.06 |
| CDY01491 | Canola | golgi, peroxisome, plasma membrane | 37.87 | 43.64 |
Protein Annotations
| EnsemblPlants:CDX72847 | EnsemblPlantsGene:GSBRNA2T00103245001 | GO:A0A078C7K1 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 |
| PFAM:PF09335 | ProteinID:CDX72847 | ProteinID:CDX72847.1 | TMHMM:TMhelix | UniParc:UPI0004EE6420 | MapMan:35.1 |
Description
BnaC06g32950D
Coordinates
chrLK031797:+:647685..649436
Molecular Weight (calculated)
30595.3 Da
IEP (calculated)
9.765
GRAVY (calculated)
0.542
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MALTRNLIRD EELGAMSDDD DTPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLFCIYMT MPAAEFVKLK LPRSISDLRL LKDNLADYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVIK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEIGKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH IFFLATLVGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI YE
101: CATYIFMQTF MIPGTIFMSL LAGALFGVIK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEIGKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH IFFLATLVGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI YE
001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.