Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96363 | Canola | plasma membrane | 93.84 | 95.22 |
| CDX72847 | Canola | plasma membrane | 93.48 | 94.85 |
| CDY03670 | Canola | peroxisome | 65.58 | 87.86 |
| CDX75108 | Canola | plasma membrane | 78.26 | 78.55 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 79.35 | 78.49 |
| CDY48052 | Canola | plasma membrane | 77.9 | 78.18 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 79.71 | 78.01 |
| KRG91806 | Soybean | plasma membrane | 76.45 | 77.86 |
| AT1G71940.2 | Thale cress | plasma membrane | 86.23 | 77.78 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 79.35 | 77.66 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 75.36 | 76.75 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 75.0 | 72.63 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 70.65 | 71.43 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 70.65 | 71.43 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 61.96 | 70.66 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 70.29 | 70.04 |
| CDX90446 | Canola | cytosol | 48.91 | 64.29 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 63.77 | 63.08 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 63.77 | 62.86 |
| Zm00001d033664_P001 | Maize | peroxisome | 63.04 | 62.82 |
| Os03t0703900-01 | Rice | peroxisome | 63.04 | 62.82 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 63.77 | 62.63 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 63.41 | 62.06 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 75.36 | 60.82 |
| CDY54781 | Canola | plasma membrane | 55.8 | 59.92 |
| CDX78801 | Canola | plasma membrane | 55.43 | 59.53 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 96.38 | 58.72 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 89.13 | 53.36 |
| CDY01492 | Canola | plasma membrane | 27.54 | 46.06 |
| CDY01491 | Canola | golgi, peroxisome, plasma membrane | 35.87 | 41.95 |
Protein Annotations
| EnsemblPlants:CDX82201 | EnsemblPlantsGene:GSBRNA2T00137287001 | GO:A0A078CYE9 | InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 |
| PFAM:PF09335 | ProteinID:CDX82201 | ProteinID:CDX82201.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF0D1F |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC02g20890D
Coordinates
chrLK031827:-:1947188..1948572
Molecular Weight (calculated)
30922.6 Da
IEP (calculated)
9.776
GRAVY (calculated)
0.520
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSVMAPTRN LIRDEELGTI SDEDDSPSGK RSKLDRFPIS RWELAVSLGV FLVFSSGLFC IYITMPAAEL GKLNLPRSIS DLRLLKDNLA NYANEYPAQF
101: VLGYCATYIF MQTFMIPGTI FMSLLAGALF GVVKGVVLVV FNATAGATSC FFLSKLIGRP LITWLWPEKL RFFQAEIGKR RDKLLNYMLF LRITPTLPNL
201: FINLASPIVD VPFHVFFLAT LVGLIPAAYI TVRAGLAIGD LKSVKDLYDF KTLSVLFLIG FISILPTILK RKKIYE
101: VLGYCATYIF MQTFMIPGTI FMSLLAGALF GVVKGVVLVV FNATAGATSC FFLSKLIGRP LITWLWPEKL RFFQAEIGKR RDKLLNYMLF LRITPTLPNL
201: FINLASPIVD VPFHVFFLAT LVGLIPAAYI TVRAGLAIGD LKSVKDLYDF KTLSVLFLIG FISILPTILK RKKIYE
001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.