CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
golgi 2
extracellular 1
plasma membrane 3
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX92368
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09580.1	CDX67837	AT3G60600.1	21798944
AT4G09580.1	CDX71796	AT3G60600.1	21798944
AT4G09580.1	CDX89063	AT3G60600.1	21798944
AT4G09580.1	CDY41153	AT3G60600.1	21798944
AT4G09580.1	CDY48365	AT3G60600.1	21798944
AT4G09580.1	CDX70995	AT5G22290.1	21798944
AT4G09580.1	CDX88803	AT5G22290.1	21798944
AT4G09580.1	CDX92368	AT5G22290.1	21798944
AT4G09580.1	CDY09128	AT5G22290.1	21798944
AT4G09580.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038380.1-P	Field mustard	plasma membrane	99.27	99.27
CDY48052	Canola	plasma membrane	99.27	99.27
AT4G09580.1	Thale cress	golgi, peroxisome, plasma membrane	94.18	90.24
CDX72847	Canola	plasma membrane	78.18	79.04
CDX96363	Canola	plasma membrane	78.18	79.04
CDX82201	Canola	peroxisome	78.55	78.26
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	78.55	77.42
PGSC0003DMT400067170	Potato	plasma membrane	77.45	75.53
Solyc06g065400.2.1	Tomato	plasma membrane	77.09	75.18
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	76.0	73.33
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	62.18	70.66
GSMUA_Achr7P11860_001	Banana	peroxisome	69.82	69.31
GSMUA_Achr6P06250_001	Banana	plasma membrane	68.73	69.23
GSMUA_Achr6P04140_001	Banana	plasma membrane	68.36	68.86
CDY03670	Canola	peroxisome	49.45	66.02
EER93600	Sorghum	peroxisome, plasma membrane, plastid	63.64	62.72
Zm00001d033664_P001	Maize	peroxisome	62.91	62.45
CDX90446	Canola	cytosol	47.64	62.38
TraesCS4A01G272200.1	Wheat	plasma membrane	63.27	62.14
TraesCS4B01G041800.1	Wheat	plasma membrane	63.27	61.92
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	76.36	61.4
TraesCS4D01G039000.1	Wheat	plasma membrane	62.91	61.35
Os03t0703900-01	Rice	peroxisome	60.0	59.57
CDY54781	Canola	plasma membrane	54.91	58.75
CDX78801	Canola	plasma membrane	54.18	57.98
CDY36672	Canola	cytosol, nucleus, plasma membrane	78.18	47.46
CDX68293	Canola	cytosol, nucleus, plasma membrane, plastid	74.55	44.47
CDY01492	Canola	plasma membrane	25.45	42.42
CDY01491	Canola	golgi, peroxisome, plasma membrane	35.27	41.1

Protein Annotations

EnsemblPlants:CDX75108	EnsemblPlantsGene:GSBRNA2T00118827001	GO:A0A078CJ76	InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF3
PFAM:PF09335	ProteinID:CDX75108	ProteinID:CDX75108.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF3C9B
MapMan:35.1	:	:	:	:	:

Description

BnaC09g25740D

Coordinates

chrLK031803:-:299531..301274

Molecular Weight (calculated)

30802.5 Da

IEP (calculated)

10.137

GRAVY (calculated)

0.516

Length

275 amino acids

Sequence
(BLAST)

001: MAAPRNLTGD SGGKLVVKDE ESAAASSSKR TKSERFPLSR WEFVVFFTVF LVFTTGLLCI YLTMPAAEYG KLKLPRTISD LRLLKDNLGS YASEYPARFI
101: LGYCSTYIFM QTFMIPGTIF MSLLAGALFG VVRGFVLVVL NATAGACSCF FLSKLVGRPL VCWLWPEKLR FFQAEIGKRR DKLLNYMLFL RITPTLPNLF
201: INLSSPIVDI PFHVFFLATL VGLMPASYIT VRAGLALGDL KSVKDLYDFK TLSVLFLIGS ISIFPALLKR KRVYE

Best Arabidopsis Sequence Match ( AT4G09580.1 )
(BLAST)

001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE

Arabidopsis Description

Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [golgi,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.