CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003904.1-P	Field mustard	peroxisome	55.1	91.7
CDX96363	Canola	plasma membrane	53.8	91.18
CDX72847	Canola	plasma membrane	53.58	90.81
CDX82201	Canola	peroxisome	53.36	89.13
CDY03670	Canola	peroxisome	35.36	79.13
Solyc06g065400.2.1	Tomato	plasma membrane	46.42	75.89
PGSC0003DMT400067170	Potato	plasma membrane	46.2	75.53
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	45.12	74.55
CDX75108	Canola	plasma membrane	44.47	74.55
CDY48052	Canola	plasma membrane	44.25	74.18
KRG91806	Soybean	plasma membrane	43.6	74.17
AT1G71940.2	Thale cress	plasma membrane	49.02	73.86
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	42.52	72.32
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	36.88	70.25
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	43.17	69.82
GSMUA_Achr6P06250_001	Banana	plasma membrane	41.21	69.6
GSMUA_Achr6P04140_001	Banana	plasma membrane	41.0	69.23
GSMUA_Achr7P11860_001	Banana	peroxisome	41.43	68.95
EER93600	Sorghum	peroxisome, plasma membrane, plastid	39.48	65.23
Zm00001d033664_P001	Maize	peroxisome	39.05	64.98
Os03t0703900-01	Rice	peroxisome	38.83	64.62
CDX90446	Canola	cytosol	29.28	64.29
TraesCS4A01G272200.1	Wheat	plasma membrane	39.05	64.29
TraesCS4D01G039000.1	Wheat	plasma membrane	39.26	64.18
TraesCS4B01G041800.1	Wheat	plasma membrane	39.05	64.06
CDY54781	Canola	plasma membrane	34.27	61.48
CDX78801	Canola	plasma membrane	33.62	60.31
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	44.03	59.36
CDY36672	Canola	cytosol, nucleus, plasma membrane	56.4	57.4
CDY01492	Canola	plasma membrane	16.27	45.45
CDY01491	Canola	golgi, peroxisome, plasma membrane	22.13	43.22

Protein Annotations

EnsemblPlants:CDX68293	EnsemblPlantsGene:GSBRNA2T00099579001	GO:A0A078BZE8	InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF3
PFAM:PF09335	ProteinID:CDX68293	ProteinID:CDX68293.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE81A4
MapMan:35.1	:	:	:	:	:

Description

BnaA07g23330D

Coordinates

chrLK031787:-:4835510..4838026

Molecular Weight (calculated)

51721.4 Da

IEP (calculated)

9.870

GRAVY (calculated)

0.011

Length

461 amino acids

Sequence
(BLAST)

001: MALNSESSEE FSFPLLASQD SSQTSGSDSP PLWKHSPEKT RRRYDDGRLI IGRYDDDGQR KSFSCVETRS LWNVNAEEKM DMLWEELNEE PPPPPPRSQS
101: LRIDLGGDKR SSLFPDESSA VGCGMKLTKK RPSTKMKMST NVMVLMRVLK KILVIRSSSQ RSPAKTHPRL VSSATWEGPA VKLPMLHSVM APTRNLIRDE
201: ELGAISDDDD SPSGKRSKLD RFPLSRWELA VSLGVFLVFS SGLFCIYITM PAAEFGKLKL PRSISDLRSL KDNLANYANE YPAQFVLGYC ATYIFMQTFM
301: IPGTIFMSLL AGALFGVIKG VILVVFNATA GATCCFFLSK LIGRPLITWL WPDKLRFFQA EIGKRRDKLL NYMLFLRITP TLPNLFINLA SPIVDVPFHV
401: FFLATLVGLI PAAYITVRAG LAIGDLKSVK DLYDFKTLSV LFLIGFISIL PTILKRKKIY E

Best Arabidopsis Sequence Match ( AT1G71940.1 )
(BLAST)

001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.