CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	97.79	97.79
Bra016097.1-P	Field mustard	plasma membrane	78.6	78.31
CDX96363	Canola	plasma membrane	78.6	78.31
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	80.44	78.14
CDX72847	Canola	plasma membrane	78.23	77.94
CDX82201	Canola	peroxisome	77.86	76.45
Bra003904.1-P	Field mustard	peroxisome	77.86	76.17
Solyc06g065400.2.1	Tomato	plasma membrane	78.97	75.89
PGSC0003DMT400067170	Potato	plasma membrane	78.6	75.53
GSMUA_Achr6P06250_001	Banana	plasma membrane	74.54	73.99
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	77.49	73.68
GSMUA_Achr6P04140_001	Banana	plasma membrane	73.8	73.26
GSMUA_Achr7P11860_001	Banana	peroxisome	74.17	72.56
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	63.84	71.49
TraesCS4A01G272200.1	Wheat	plasma membrane	66.79	64.64
EER93600	Sorghum	peroxisome, plasma membrane, plastid	66.42	64.52
TraesCS4B01G041800.1	Wheat	plasma membrane	66.79	64.41
AT1G71940.2	Thale cress	plasma membrane	72.69	64.38
Os03t0703900-01	Rice	peroxisome	65.68	64.26
Zm00001d033664_P001	Maize	peroxisome	65.68	64.26
TraesCS4D01G039000.1	Wheat	plasma membrane	66.79	64.18
CDY03670	Canola	peroxisome	48.71	64.08
Bra007997.1-P	Field mustard	plasma membrane	48.34	63.59
KRH39560	Soybean	plasma membrane	59.41	62.4
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	77.86	61.7
KRH74398	Soybean	golgi, peroxisome, plasma membrane	59.41	55.9
CDY36672	Canola	cytosol, nucleus, plasma membrane	78.23	46.8
CDX68293	Canola	cytosol, nucleus, plasma membrane, plastid	74.17	43.6

Protein Annotations

EMBL:ACUP02012707	EnsemblPlants:KRG91806	EnsemblPlantsGene:GLYMA_20G175400	EntrezGene:100796212	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF3	PFAM:PF09335	ProteinID:KRG91806
ProteinID:KRG91806.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233D9B5	UniProt:I1NHA4	MapMan:35.1

Description

hypothetical protein

Coordinates

chr20:-:41272341..41275874

Molecular Weight (calculated)

30385.6 Da

IEP (calculated)

10.020

GRAVY (calculated)

0.428

Length

271 amino acids

Sequence
(BLAST)

001: MAAPRNVTAT RDEEKGEDDD SPSAKKPKSE RFPLNTWEFA VAVAVFLVFS TGLFCIYLTM PSAAYTNLKL PRTLSDLRLL KEHLSTYASN HPAQFILGYC
101: STYIFMQTFM IPGTIFMSLL AGALFGVVRG ILLVVFNATA GASSCFFLSK LIGRPLVSWL WPEKLRFFQA EIAKRRDRLL NYMLFLRITP TLPNLFINLA
201: SPIVDVPFHI FFSATLIGLV PASYITVRAG LALGDLKSIK DLYDFKTLSV LFLIGFVSIA PTLLKRKRVY E

Best Arabidopsis Sequence Match ( AT4G09580.1 )
(BLAST)

001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE

Arabidopsis Description

Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.