Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 88.09 | 89.38 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 85.92 | 87.18 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 66.43 | 76.03 |
| KRG91806 | Soybean | plasma membrane | 72.56 | 74.17 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 74.37 | 73.84 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 74.37 | 73.05 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 71.12 | 72.69 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 73.65 | 72.34 |
| Bra016097.1-P | Field mustard | plasma membrane | 70.04 | 71.32 |
| CDX96363 | Canola | plasma membrane | 70.04 | 71.32 |
| Zm00001d033664_P001 | Maize | peroxisome | 71.12 | 71.12 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 71.48 | 70.97 |
| CDX72847 | Canola | plasma membrane | 69.68 | 70.96 |
| CDX82201 | Canola | peroxisome | 70.04 | 70.29 |
| Os03t0703900-01 | Rice | peroxisome | 70.04 | 70.04 |
| CDX75108 | Canola | plasma membrane | 69.31 | 69.82 |
| Bra003904.1-P | Field mustard | peroxisome | 69.68 | 69.68 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 71.48 | 69.47 |
| CDY48052 | Canola | plasma membrane | 68.95 | 69.45 |
| Bra038380.1-P | Field mustard | plasma membrane | 68.95 | 69.45 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 68.59 | 67.86 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 68.95 | 67.73 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 68.59 | 67.62 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 70.04 | 67.6 |
| GSMUA_Achr4P19040_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 54.51 | 60.89 |
| GSMUA_Achr4P12280_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 53.07 | 60.25 |
| GSMUA_Achr9P23350_001 | Banana | mitochondrion, plasma membrane | 52.71 | 59.84 |
| GSMUA_Achr4P27330_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 54.15 | 59.06 |
| CDY03670 | Canola | peroxisome | 43.32 | 58.25 |
| Bra007997.1-P | Field mustard | plasma membrane | 42.96 | 57.77 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 71.12 | 57.6 |
| AT1G71940.2 | Thale cress | plasma membrane | 63.18 | 57.19 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 70.04 | 42.83 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 68.95 | 41.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P11860_001 | EnsemblPlants:GSMUA_Achr7T11860_001 | EnsemblPlantsGene:GSMUA_Achr7G11860_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:SNARE_assoc | PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002960F6B | UniProt:M0TGS4 | MapMan:35.1 | : | : | : |
Description
Uncharacterized membrane protein At4g09580 [Source:GMGC_GENE;Acc:GSMUA_Achr7G11860_001]
Coordinates
chr7:+:9469391..9473723
Molecular Weight (calculated)
31155.0 Da
IEP (calculated)
9.963
GRAVY (calculated)
0.529
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLRIATDL RDEECGISAP EDSPMAKKPL RADSSRIPLT RWEAAAAATV FLIFSVGLFC IFLTMPEADY DKILRLPRNL SDLRILKDNL AVYARDYHAK
101: FILGYCSIYI FMQTFMIPGT IFLSLLAGAL FGVVKGVILV VVSATSGASS CYFLSKLIGR PLVSWMWPEK LRFFQAEIAK RKEKLLNYML FLRITPSLPN
201: TFINLASPIV DIPFRIFFLA TLVGLVPASY ITVRAGLALG DLKSVRDLYD MKTLVVLFLI GFISIFPTIL KRKRTYE
101: FILGYCSIYI FMQTFMIPGT IFLSLLAGAL FGVVKGVILV VVSATSGASS CYFLSKLIGR PLVSWMWPEK LRFFQAEIAK RKEKLLNYML FLRITPSLPN
201: TFINLASPIV DIPFRIFFLA TLVGLVPASY ITVRAGLALG DLKSVRDLYD MKTLVVLFLI GFISIFPTIL KRKRTYE
001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE
Arabidopsis Description
SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.