Factsheet for Bra038380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G09580.1	Bra003423.1-P	AT3G60600.1	21798944
AT4G09580.1	Bra007547.1-P	AT3G60600.1	21798944
AT4G09580.1	Bra014481.1-P	AT3G60600.1	21798944
AT4G09580.1	Bra002403.1-P	AT5G22290.1	21798944
AT4G09580.1	Bra006619.1-P	AT5G22290.1	21798944
AT4G09580.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75108	Canola	plasma membrane	99.27	99.27
CDY48052	Canola	plasma membrane	99.27	99.27
AT4G09580.1	Thale cress	golgi, peroxisome, plasma membrane	94.18	90.24
Bra016097.1-P	Field mustard	plasma membrane	78.55	79.41
Bra003904.1-P	Field mustard	peroxisome	78.55	77.98
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	78.18	77.06
PGSC0003DMT400067170	Potato	plasma membrane	77.09	75.18
Solyc06g065400.2.1	Tomato	plasma membrane	76.73	74.82
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	75.64	72.98
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	61.82	70.25
GSMUA_Achr7P11860_001	Banana	peroxisome	69.45	68.95
GSMUA_Achr6P06250_001	Banana	plasma membrane	68.36	68.86
GSMUA_Achr6P04140_001	Banana	plasma membrane	68.0	68.5
Bra007997.1-P	Field mustard	plasma membrane	49.09	65.53
Bra012640.1-P	Field mustard	cytosol	48.0	62.86
EER93600	Sorghum	peroxisome, plasma membrane, plastid	63.27	62.37
Zm00001d033664_P001	Maize	peroxisome	62.55	62.09
TraesCS4A01G272200.1	Wheat	plasma membrane	62.91	61.79
TraesCS4B01G041800.1	Wheat	plasma membrane	62.91	61.57
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	76.0	61.11
TraesCS4D01G039000.1	Wheat	plasma membrane	62.55	60.99
Os03t0703900-01	Rice	peroxisome	59.64	59.21
Bra040182.1-P	Field mustard	plasma membrane	54.55	58.37

Protein Annotations

EnsemblPlants:Bra038380.1	EnsemblPlants:Bra038380.1-P	EnsemblPlantsGene:Bra038380	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0016020	GO:GO:0016021	InterPro:SNARE_assoc	PANTHER:PTHR43220
PANTHER:PTHR43220:SF3	PFAM:PF09335	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025423A6	UniProt:M4FBB4
MapMan:35.1	:	:	:	:	:

Description

AT4G09580 (E=4e-114) | INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71940.1); Has 2023 Blast hits to 2023 proteins in 496 species: Archae - 2; Bacteria - 1014; Metazoa - 198; Fungi - 27; Plants - 131; Viruses - 0; Other Eukaryotes - 651 (source: NCBI BLink).

Coordinates

chrA09:-:11109302..11110406

Molecular Weight (calculated)

30758.4 Da

IEP (calculated)

10.137

GRAVY (calculated)

0.518

Length

275 amino acids

Sequence
(BLAST)

001: MAAPRNLTGD GGGKLVVKDE ESAAASSSKR TKSERFPLSR WEFVVFFTVF LVFTTGLLCI YLTMPAAEYG KLKLPRTISD LRLLKDNLGS YASEYPARFI
101: LGYCSTYIFM QTFMIPGTIF MSLLAGALFG VVRGFVLVVL NATAGACSCF FLSKLVGRPL VCWLWPDKLR FFQAEIGKRR DKLLNYMLFL RITPTLPNLF
201: INLSSPIVDI PFHVFFLATL VGLMPASYIT VRAGLALGDL KSVKDLYDFK TLSVLFLIGS ISIFPALLKR KRVYE

Best Arabidopsis Sequence Match ( AT4G09580.1 )
(BLAST)

001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE

Arabidopsis Description

Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.