Factsheet for Bra003904.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016097.1-P	Field mustard	plasma membrane	95.31	97.06
Bra007997.1-P	Field mustard	plasma membrane	64.98	87.38
AT1G71940.2	Thale cress	plasma membrane	87.0	78.76
Bra038380.1-P	Field mustard	plasma membrane	77.98	78.55
Solyc06g065400.2.1	Tomato	plasma membrane	79.78	78.37
PGSC0003DMT400067170	Potato	plasma membrane	79.42	78.01
KRG91806	Soybean	plasma membrane	76.17	77.86
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	77.98	77.42
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	74.37	76.01
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	74.37	72.28
GSMUA_Achr6P04140_001	Banana	plasma membrane	70.76	71.79
GSMUA_Achr6P06250_001	Banana	plasma membrane	70.76	71.79
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	61.73	70.66
GSMUA_Achr7P11860_001	Banana	peroxisome	69.68	69.68
Bra012640.1-P	Field mustard	cytosol	48.74	64.29
EER93600	Sorghum	peroxisome, plasma membrane, plastid	64.26	63.8
Zm00001d033664_P001	Maize	peroxisome	63.54	63.54
Os03t0703900-01	Rice	peroxisome	63.18	63.18
TraesCS4A01G272200.1	Wheat	plasma membrane	63.54	62.86
TraesCS4D01G039000.1	Wheat	plasma membrane	63.9	62.77
TraesCS4B01G041800.1	Wheat	plasma membrane	63.54	62.63
Bra040182.1-P	Field mustard	plasma membrane	56.32	60.7
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	74.73	60.53
CDX68293	Canola	cytosol, nucleus, plasma membrane, plastid	91.7	55.1

Protein Annotations

EnsemblPlants:Bra003904.1	EnsemblPlants:Bra003904.1-P	EnsemblPlantsGene:Bra003904	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF3	PFAM:PF09335	TMHMM:TMhelix	UniParc:UPI000254181F
UniProt:M4CI71	MapMan:35.1	:	:	:	:

Description

AT1G71940 (E=2e-146) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09580.1); Has 2462 Blast hits to 2462 proteins in 530 species: Archae - 4; Bacteria - 1186; Metazoa - 194; Fungi - 22; Plants - 141; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).

Coordinates

chrA07:-:15654740..15655982

Molecular Weight (calculated)

31069.8 Da

IEP (calculated)

9.771

GRAVY (calculated)

0.548

Length

277 amino acids

Sequence
(BLAST)

001: MLHSVMAPTR NLIRDEELGA ISDDDDSPSG KRSKLDRFPL SRWELAVSLG VFLVFSSGLF CIYITMPAAE FGKLKLPRSI SDLRLLKDNL ANYANEYPAQ
101: FVLGYCATYI FMQTFMIPGT IFMSLLAGAL FGVIKGVILV VFNATAGATC CFFLSKLIGR PLITWLWPDK LRFFQAEIGK RRDKLLNYML FLRITPTLPN
201: LFINLASPIV DVPFHVFFLA TLVGLIPAAY ITVRAGLAIG DLKSVKDLYD FKTLSVLFLI GFISILPTIL KRKKIYE

Best Arabidopsis Sequence Match ( AT1G71940.1 )
(BLAST)

001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.