Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09580.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT4G09580.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067170 | Potato | plasma membrane | 81.05 | 81.91 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 96.84 | 80.7 |
| KRG91806 | Soybean | plasma membrane | 73.68 | 77.49 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 73.68 | 77.49 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 74.74 | 76.34 |
| Bra016097.1-P | Field mustard | plasma membrane | 72.63 | 76.1 |
| CDX96363 | Canola | plasma membrane | 72.63 | 76.1 |
| CDX75108 | Canola | plasma membrane | 73.33 | 76.0 |
| CDX72847 | Canola | plasma membrane | 72.28 | 75.74 |
| Bra038380.1-P | Field mustard | plasma membrane | 72.98 | 75.64 |
| CDY48052 | Canola | plasma membrane | 72.98 | 75.64 |
| CDX82201 | Canola | peroxisome | 72.63 | 75.0 |
| Bra003904.1-P | Field mustard | peroxisome | 72.28 | 74.37 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 73.68 | 73.17 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 69.47 | 71.48 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 68.42 | 71.43 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 68.07 | 71.06 |
| HORVU4Hr1G006740.1 | Barley | endoplasmic reticulum, plasma membrane | 60.0 | 70.66 |
| CDY03670 | Canola | peroxisome | 46.67 | 64.56 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 62.81 | 64.16 |
| Bra007997.1-P | Field mustard | plasma membrane | 46.32 | 64.08 |
| Zm00001d033664_P001 | Maize | peroxisome | 62.11 | 63.9 |
| Os03t0703900-01 | Rice | peroxisome | 61.75 | 63.54 |
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 61.75 | 62.86 |
| AT1G71940.2 | Thale cress | plasma membrane | 67.37 | 62.75 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 61.75 | 62.63 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 61.75 | 62.41 |
| PGSC0003DMT400045191 | Potato | plasma membrane | 54.74 | 56.52 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 72.28 | 45.47 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 69.82 | 43.17 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400002299 | EnsemblPlantsGene:PGSC0003DMG400000881 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:SNARE_assoc |
| PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 | PGSC:PGSC0003DMG400000881 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002966EB4 | UniProt:M0ZJW6 | MapMan:35.1 | : | : | : |
Description
Uncharacterized membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000881]
Coordinates
chr11:-:11175623..11179693
Molecular Weight (calculated)
32256.4 Da
IEP (calculated)
9.890
GRAVY (calculated)
0.474
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPRNIVVD TSRLVTRDEE EKKSMDMSCA AELDSPTAKR FKEGRFPLSS WEFAAAFGVI LVFSTGLFCL YLSMPPTEYG KLKLPRTISD LRILKDNLGM
101: YAEVYPTKFI LGYCSTYIFM QTFMIPGTIF MSLLAGALFG VFRGLLLVVF NATAGASSCY FLSKLIGRPI VNWMWPEKLR FFQAEIVKRR DKLLNYMLFL
201: RITPTLPNLF INLASPIVDI PFHIFFLATV IGLIPAAYIT VKAGLTLGEL KSVKDLYDFK TLSVLFLIGT LIILPTILKR KRIYE
101: YAEVYPTKFI LGYCSTYIFM QTFMIPGTIF MSLLAGALFG VFRGLLLVVF NATAGASSCY FLSKLIGRPI VNWMWPEKLR FFQAEIVKRR DKLLNYMLFL
201: RITPTLPNLF INLASPIVDI PFHIFFLATV IGLIPAAYIT VKAGLTLGEL KSVKDLYDFK TLSVLFLIGT LIILPTILKR KRIYE
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.