Factsheet for Bra016097.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	endoplasmic reticulum, plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96363	Canola	plasma membrane	100.0	100.0
CDX72847	Canola	plasma membrane	99.63	99.63
Bra003904.1-P	Field mustard	peroxisome	97.06	95.31
Bra007997.1-P	Field mustard	plasma membrane	62.87	83.01
KRG91806	Soybean	plasma membrane	78.31	78.6
Bra038380.1-P	Field mustard	plasma membrane	79.41	78.55
Solyc06g065400.2.1	Tomato	plasma membrane	81.25	78.37
AT1G71940.2	Thale cress	plasma membrane	87.87	78.1
PGSC0003DMT400067170	Potato	plasma membrane	80.88	78.01
VIT_18s0072g01050.t01	Wine grape	cytosol, golgi, peroxisome	79.04	77.06
KRH34979	Soybean	nucleus, peroxisome, plasma membrane	76.47	76.75
PGSC0003DMT400002299	Potato	golgi, peroxisome, plasma membrane	76.1	72.63
GSMUA_Achr6P04140_001	Banana	plasma membrane	72.06	71.79
GSMUA_Achr6P06250_001	Banana	plasma membrane	72.06	71.79
HORVU4Hr1G006740.1	Barley	endoplasmic reticulum, plasma membrane	63.6	71.49
GSMUA_Achr7P11860_001	Banana	peroxisome	71.32	70.04
Bra012640.1-P	Field mustard	cytosol	50.74	65.71
EER93600	Sorghum	peroxisome, plasma membrane, plastid	65.44	63.8
TraesCS4A01G272200.1	Wheat	plasma membrane	65.44	63.57
Os03t0703900-01	Rice	peroxisome	64.71	63.54
Zm00001d033664_P001	Maize	peroxisome	64.71	63.54
TraesCS4B01G041800.1	Wheat	plasma membrane	65.44	63.35
TraesCS4D01G039000.1	Wheat	plasma membrane	65.07	62.77
Bra040182.1-P	Field mustard	plasma membrane	58.09	61.48
Solyc11g018620.1.1	Tomato	endoplasmic reticulum, plasma membrane	76.47	60.82

Protein Annotations

EnsemblPlants:Bra016097.1	EnsemblPlants:Bra016097.1-P	EnsemblPlantsGene:Bra016097	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SNARE_assoc	PANTHER:PTHR43220	PANTHER:PTHR43220:SF3	PFAM:PF09335	TMHMM:TMhelix	UniParc:UPI0002541B62
UniProt:M4DHX0	MapMan:35.1	:	:	:	:

Description

AT1G71940 (E=2e-144) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09580.1); Has 2462 Blast hits to 2462 proteins in 530 species: Archae - 4; Bacteria - 1186; Metazoa - 194; Fungi - 22; Plants - 141; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink).

Coordinates

chrA07:+:19428548..19429932

Molecular Weight (calculated)

30581.2 Da

IEP (calculated)

9.765

GRAVY (calculated)

0.542

Length

272 amino acids

Sequence
(BLAST)

001: MALTRNLIRD EELGAMSDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLFCIYMT MPAAEFVKLK LPRSISDLRL LKDNLADYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVIK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEIGKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH IFFLATLVGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI YE

Best Arabidopsis Sequence Match ( AT1G71940.1 )
(BLAST)

001: MAPTRILTRD EELGVISDDD DSPSGKRSKL DRFPLSRWEL AVSLGVFLVF SSGLCCIYMT MPAAEFGKLK LPRSLADLRL LKDNLANYAN EYPAQFVLGY
101: CATYIFMQTF MIPGTIFMSL LAGALFGVFK GVVLVVFNAT AGATSCFFLS KLIGRPLITW LWPDKLRFFQ AEISKRRDKL LNYMLFLRIT PTLPNLFINL
201: ASPIVDVPFH VFFLATLIGL IPAAYITVRA GLAIGDLKSV KDLYDFKTLS VLFLIGFISI LPTILKRKKI VE

Arabidopsis Description

SNARE associated Golgi protein family [Source:UniProtKB/TrEMBL;Acc:F4IBM1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.