Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G091830.4 | |
| HORVU6Hr1G060760.3 | |
| HORVU7Hr1G071270.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G09580.1 | HORVU2Hr1G091830.4 | AT3G60600.1 | 21798944 |
| AT4G09580.1 | HORVU6Hr1G060760.3 | AT3G60600.1 | 21798944 |
| AT4G09580.1 | HORVU7Hr1G071270.2 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G272200.1 | Wheat | plasma membrane | 100.0 | 86.43 |
| TraesCS4B01G041800.1 | Wheat | plasma membrane | 99.59 | 85.77 |
| TraesCS4D01G039000.1 | Wheat | plasma membrane | 99.59 | 85.46 |
| Zm00001d033664_P001 | Maize | peroxisome | 90.91 | 79.42 |
| EER93600 | Sorghum | peroxisome, plasma membrane, plastid | 90.91 | 78.85 |
| Os03t0703900-01 | Rice | peroxisome | 89.26 | 77.98 |
| HORVU2Hr1G054810.1 | Barley | endoplasmic reticulum, extracellular | 32.23 | 72.22 |
| GSMUA_Achr6P06250_001 | Banana | plasma membrane | 76.86 | 68.13 |
| GSMUA_Achr6P04140_001 | Banana | plasma membrane | 76.86 | 68.13 |
| HORVU7Hr1G023440.1 | Barley | endoplasmic reticulum, plasma membrane | 49.17 | 66.85 |
| GSMUA_Achr7P11860_001 | Banana | peroxisome | 76.03 | 66.43 |
| KRG91806 | Soybean | plasma membrane | 71.49 | 63.84 |
| CDX96363 | Canola | plasma membrane | 71.49 | 63.6 |
| Bra016097.1-P | Field mustard | plasma membrane | 71.49 | 63.6 |
| CDX72847 | Canola | plasma membrane | 71.49 | 63.6 |
| KRH34979 | Soybean | nucleus, peroxisome, plasma membrane | 71.07 | 63.47 |
| VIT_18s0072g01050.t01 | Wine grape | cytosol, golgi, peroxisome | 71.9 | 62.37 |
| CDX75108 | Canola | plasma membrane | 70.66 | 62.18 |
| Solyc06g065400.2.1 | Tomato | plasma membrane | 72.31 | 62.06 |
| PGSC0003DMT400067170 | Potato | plasma membrane | 72.31 | 62.06 |
| CDX82201 | Canola | peroxisome | 70.66 | 61.96 |
| CDY48052 | Canola | plasma membrane | 70.25 | 61.82 |
| Bra038380.1-P | Field mustard | plasma membrane | 70.25 | 61.82 |
| Bra003904.1-P | Field mustard | peroxisome | 70.66 | 61.73 |
| PGSC0003DMT400002299 | Potato | golgi, peroxisome, plasma membrane | 70.66 | 60.0 |
| AT4G09580.1 | Thale cress | golgi, peroxisome, plasma membrane | 70.66 | 59.58 |
| HORVU7Hr1G051100.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 56.2 | 53.54 |
| AT1G71940.2 | Thale cress | plasma membrane | 66.94 | 52.94 |
| Solyc11g018620.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 70.25 | 49.71 |
| CDY03670 | Canola | peroxisome | 39.67 | 46.6 |
| Bra007997.1-P | Field mustard | plasma membrane | 39.26 | 46.12 |
| HORVU2Hr1G049420.14 | Barley | cytosol, plastid | 56.61 | 44.77 |
| CDY36672 | Canola | cytosol, nucleus, plasma membrane | 69.83 | 37.31 |
| CDX68293 | Canola | cytosol, nucleus, plasma membrane, plastid | 70.25 | 36.88 |
| HORVU7Hr1G044670.7 | Barley | plasma membrane | 16.12 | 25.66 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G006740.1 | EnsemblPlantsGene:HORVU4Hr1G006740 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:SNARE_assoc |
| PANTHER:PTHR43220 | PANTHER:PTHR43220:SF3 | PFAM:PF09335 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4772AF |
| UniProt:A0A287N2F2 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:15524765..15527575
Molecular Weight (calculated)
26995.9 Da
IEP (calculated)
10.409
GRAVY (calculated)
0.664
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: RPTLTRTEAL AAAAVLALFV AGIFCIFLAA PRREFGQILR LPRSLADVRL LKDNLAVYAS EHQANFVLGY CSIYIFMQTF MIPGTIFMSL LAGALFGVIK
101: GGVLVVFTAT AGASSCYFLS KLIGRPLVCW LWPERLRYFQ SEIAKRKDKL LNYMLFLRIT PTLPNTFINM ASPIVDIPFH IFFAATLIGL IPASYITVKA
201: GRALGDLRSV RELYDFKTLV VLFLIGSVAV VPTILKRKRT YE
101: GGVLVVFTAT AGASSCYFLS KLIGRPLVCW LWPERLRYFQ SEIAKRKDKL LNYMLFLRIT PTLPNTFINM ASPIVDIPFH IFFAATLIGL IPASYITVKA
201: GRALGDLRSV RELYDFKTLV VLFLIGSVAV VPTILKRKRT YE
001: MAAPRNLTGD GGARQLVKDE ESPAASSAAK GLLNDDSPTG KRTKSERFPL SRWEFAVFFT VFLVFTTGLF CIYLTMPAAE YGKLKVPRTI SDLRLLKENL
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
101: GSYASEYQAR FILGYCSTYI FMQTFMIPGT IFMSLLAGAL FGVVRGFVLV VLNATAGACS CFFLSKLVGR PLVNWLWPEK LRFFQAEIAK RRDRLLNYML
201: FLRITPTLPN LFINLSSPIV DIPFHVFFLA TLVGLMPASY ITVRAGLALG DLRSVKDLYD FKTLSVLFLI GSISIFPALL KRKRVYE
Arabidopsis Description
Uncharacterized membrane protein At4g09580 [Source:UniProtKB/Swiss-Prot;Acc:Q8L586]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.